| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is virB4 [H]
Identifier: 66767963
GI number: 66767963
Start: 1964408
End: 1966861
Strand: Direct
Name: virB4 [H]
Synonym: XC_1639
Alternate gene names: 66767963
Gene position: 1964408-1966861 (Clockwise)
Preceding gene: 66767962
Following gene: 66767965
Centisome position: 38.15
GC content: 52.4
Gene sequence:
>2454_bases ATGTTCAGCCCAGATAGTCCCATTAGTGAGTTCGTCTCCATTTCGACACATGTCGCTCCGTCCGTTCTAAAAACCACCGG TGGCGACTACTTGTTGATCTGGCATCTTGCGGGCCTGCCTTTCGTTGGACGTGACGAGTTTGAGTTGGAGCAGCGGCACA ATACCTTCAATCGTCTTGTGCAAACCCTGCGTGCGCCCGATTTTGCCAATGTTGCCTTCTGGGTCCATGATGTCCGACGT CGTCGTAAGATCGGCAACTCTGGCCGTTTCAAACAGTCGTTCAACCAGGCTTTGTCCGACGAGTACTACGCGGCATTGTC CTCGCAGAAGATCATGCAGAACGAATTGTACTTCAGCATGATCTATCGGCCTGTGGTCACGGGCAAGCGTTTGGTGGAGA AATCCGGCGATCCGGACAAGATCCGAGTCGAAGAAGAGCAAGCTATCGCCAAGGTGATCGAGCTGGCCACCAATGTAGAG GCTGTCCTAAAGGACTACTCGCCATATCGACTGGGTATGTACGAAGCGAAGAATGGCGTCGTTTTTTCCGAAACGCTGGA GTTCCTAGGCTATCTGCTGAATCGAATCGATGAACCGGTTCCTGTCTTGCAGGCTCCTGTGGCAGCATACTTACCCGTCA GCAAGCACATGTTCGCTAACAAAACCGGTGACTTTGTCATTCGCACTCCGGATGGCATCAACCACTTTGGTGCGATTCTT AATGTAAAGGAATATGCCGACGGGACATATCCAGGCATCCTCAATGGTCTGAAGTATCTTGACTTCGAGTATGTGGTCAC ACATTCCTTCAGCCCCGTGGGTCGTCATGACGCATTGAAGGTGCTGGAGCGTACTAAGGGCATGATGATTTCATCGGGCG ACAAGTCTTCTAGCCAGATTCGCGATCTTGACTTGGCGATGGATGATGTGGCATCGGGCAATTTTGTGCTTGGCGAATAT CACTTCACCGTCGCGGTATATTCCGACAGTCAGGAGAAACTTGCCCGGCAAATTGCAACCACGCGTGCCGAGCTATCCAA CGCTGGTTTTGTATCGTCCAAGGAAGACTTGGCGATCGCGTCATCGTTTTATTCTCAGTTGCCCGGCAACTGGCGGTTCC GCACGCGCATAGCCAATCTGAGTTCGCTCAACTTCCTCGGGCTGTCGCCGCTGCATAATTTCGCTCAAGGCAAGCAGCAC AACAATCCTTGGGGCGATGCTGTAACCACTTTGCAGACTACCAATGGCCAGCCGTATTACTTTAATTTCCATGCAACTCA CCCAGCCGAGAATTCCCTGGGCGAAAAAGCTATCGGAAACACGATGGTCATCGGCAAGTCGGGTACTGGTAAGACGGCGC TAATCAATTTCCTGTTGAGCCAGGTGCAGAAGTTCGACCCGGTTCCGACGATCTTCTTTTTCGACAAAGATCGTGGCGCG GAGATCTTCGTGCGTGCTTGTGGCGGTAACTATCTTGCGCTGGAAAATGGTTCGCCAACTGGTTTCAATCCGTTCCAGTG TGAGAGTAACGAGGTCAACACGCAGTTTCTGGCCGAACTGATTAAAGTGCTGGGCGGCAAAACAGAGTACAGCTCGCGTG AAGAAGAAGACATCTACCGCGCGGTCGGAGGCATGCTGGATACTCCGATGCACTTGCGCAGCATGAGTAACTTCCGCAAG AGCCTGCCCAACATGGGCGACGATGGCCTGTATGCACGCCTGCGTCGTTGGACTGCCGGAAATTCGCTGGGCTGGGTTTT TGACAACCCGGTGGACACCATCGATTTAACGCGTGCTTCCATCATTGGTTTCGATTACACAGATGTAATCGATAATGTTG AAGTGCGTGTTCCGGTAATCAACTACTTGCTACACCGACTCGAGGCGCTTATCGATGGCCGCCCTCTGATTTATGTGATG GATGAGTTCTGGAAGATCTTAGACGGAGAAGGCGGGTTGAAGGAATTCGCCAAGAACAAACAGAAAACTATTCGTAAGCA AAACGGCCTGGGGATCTTTGCCACACAAAGTCCGGAAGATGCCCTGGCTAGCGACATCGCAGCGGCCCTGATCGAGCAGA CCGCCACGATGGTGTTGTTACCGAATCCCAATGCTAGCCGCGACGACTACATCGATGGGCTCAAGCTCACCGATGCTGAG TACCAAGTTGTAGTATCTCTGGACGAGCGCTCACGGTGCTTTCTTGTCAAGCAGGGGCACGCTTCTGCGGTCTGCCAGCT TAATCTGCGCGGCATGGACGATGCGTTGTCGGTCATTTCGTCTTCTACCGATAATATCGAGATTATGCATCAGATTTTAT CGCGCAAGGCCGGGAAGTTGGGCGTTAGCGTTGGCCAGCTGACCCCGGAGCAATGGTTGGAGGACTTCTATGCAAACCGT AGGGGCTCGGGCAAACGCAAGTCTGTCAAGGACAAGGAAGTAGAGGATGTGTAA
Upstream 100 bases:
>100_bases GAGCTGCTAACCAACCCCACGCCGGCAAATGCGTGGGGTTGGCACTTTGCAAGATCAAGAATATATCGATGTGATGCTTC CCTCTTAACTTGGTAAGACC
Downstream 100 bases:
>100_bases TTCTTACACCTACAAAATTCGCCCAGCTATATGTTCAACTGTGTAGCCCGAGGCAAGAATCGCCTTGATAGCCAAGGTCA GACATGTTTCTCGAGTGTTA
Product: VirB4 protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 817; Mature: 817
Protein sequence:
>817_residues MFSPDSPISEFVSISTHVAPSVLKTTGGDYLLIWHLAGLPFVGRDEFELEQRHNTFNRLVQTLRAPDFANVAFWVHDVRR RRKIGNSGRFKQSFNQALSDEYYAALSSQKIMQNELYFSMIYRPVVTGKRLVEKSGDPDKIRVEEEQAIAKVIELATNVE AVLKDYSPYRLGMYEAKNGVVFSETLEFLGYLLNRIDEPVPVLQAPVAAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL NVKEYADGTYPGILNGLKYLDFEYVVTHSFSPVGRHDALKVLERTKGMMISSGDKSSSQIRDLDLAMDDVASGNFVLGEY HFTVAVYSDSQEKLARQIATTRAELSNAGFVSSKEDLAIASSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQH NNPWGDAVTTLQTTNGQPYYFNFHATHPAENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPVPTIFFFDKDRGA EIFVRACGGNYLALENGSPTGFNPFQCESNEVNTQFLAELIKVLGGKTEYSSREEEDIYRAVGGMLDTPMHLRSMSNFRK SLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRASIIGFDYTDVIDNVEVRVPVINYLLHRLEALIDGRPLIYVM DEFWKILDGEGGLKEFAKNKQKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMVLLPNPNASRDDYIDGLKLTDAE YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILSRKAGKLGVSVGQLTPEQWLEDFYANR RGSGKRKSVKDKEVEDV
Sequences:
>Translated_817_residues MFSPDSPISEFVSISTHVAPSVLKTTGGDYLLIWHLAGLPFVGRDEFELEQRHNTFNRLVQTLRAPDFANVAFWVHDVRR RRKIGNSGRFKQSFNQALSDEYYAALSSQKIMQNELYFSMIYRPVVTGKRLVEKSGDPDKIRVEEEQAIAKVIELATNVE AVLKDYSPYRLGMYEAKNGVVFSETLEFLGYLLNRIDEPVPVLQAPVAAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL NVKEYADGTYPGILNGLKYLDFEYVVTHSFSPVGRHDALKVLERTKGMMISSGDKSSSQIRDLDLAMDDVASGNFVLGEY HFTVAVYSDSQEKLARQIATTRAELSNAGFVSSKEDLAIASSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQH NNPWGDAVTTLQTTNGQPYYFNFHATHPAENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPVPTIFFFDKDRGA EIFVRACGGNYLALENGSPTGFNPFQCESNEVNTQFLAELIKVLGGKTEYSSREEEDIYRAVGGMLDTPMHLRSMSNFRK SLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRASIIGFDYTDVIDNVEVRVPVINYLLHRLEALIDGRPLIYVM DEFWKILDGEGGLKEFAKNKQKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMVLLPNPNASRDDYIDGLKLTDAE YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILSRKAGKLGVSVGQLTPEQWLEDFYANR RGSGKRKSVKDKEVEDV >Mature_817_residues MFSPDSPISEFVSISTHVAPSVLKTTGGDYLLIWHLAGLPFVGRDEFELEQRHNTFNRLVQTLRAPDFANVAFWVHDVRR RRKIGNSGRFKQSFNQALSDEYYAALSSQKIMQNELYFSMIYRPVVTGKRLVEKSGDPDKIRVEEEQAIAKVIELATNVE AVLKDYSPYRLGMYEAKNGVVFSETLEFLGYLLNRIDEPVPVLQAPVAAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL NVKEYADGTYPGILNGLKYLDFEYVVTHSFSPVGRHDALKVLERTKGMMISSGDKSSSQIRDLDLAMDDVASGNFVLGEY HFTVAVYSDSQEKLARQIATTRAELSNAGFVSSKEDLAIASSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQH NNPWGDAVTTLQTTNGQPYYFNFHATHPAENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPVPTIFFFDKDRGA EIFVRACGGNYLALENGSPTGFNPFQCESNEVNTQFLAELIKVLGGKTEYSSREEEDIYRAVGGMLDTPMHLRSMSNFRK SLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRASIIGFDYTDVIDNVEVRVPVINYLLHRLEALIDGRPLIYVM DEFWKILDGEGGLKEFAKNKQKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMVLLPNPNASRDDYIDGLKLTDAE YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILSRKAGKLGVSVGQLTPEQWLEDFYANR RGSGKRKSVKDKEVEDV
Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 91162; Mature: 91162
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSPDSPISEFVSISTHVAPSVLKTTGGDYLLIWHLAGLPFVGRDEFELEQRHNTFNRLV CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH QTLRAPDFANVAFWVHDVRRRRKIGNSGRFKQSFNQALSDEYYAALSSQKIMQNELYFSM HHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYRPVVTGKRLVEKSGDPDKIRVEEEQAIAKVIELATNVEAVLKDYSPYRLGMYEAKNGV HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE VFSETLEFLGYLLNRIDEPVPVLQAPVAAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL EHHHHHHHHHHHHHHCCCCCCHHHCCHHHHCCCHHHHHCCCCCCEEEECCCCCCHHHHHH NVKEYADGTYPGILNGLKYLDFEYVVTHSFSPVGRHDALKVLERTKGMMISSGDKSSSQI HHHHHCCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCHHH RDLDLAMDDVASGNFVLGEYHFTVAVYSDSQEKLARQIATTRAELSNAGFVSSKEDLAIA HHHHHHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH SSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQHNNPWGDAVTTLQTTNGQPYY HHHHHHCCCCEEEEEEECCCCCCCEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCCEEE FNFHATHPAENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPVPTIFFFDKDRGA EEEEECCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC EIFVRACGGNYLALENGSPTGFNPFQCESNEVNTQFLAELIKVLGGKTEYSSREEEDIYR EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH AVGGMLDTPMHLRSMSNFRKSLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRAS HHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCEEECCHHH IIGFDYTDVIDNVEVRVPVINYLLHRLEALIDGRPLIYVMDEFWKILDGEGGLKEFAKNK EECCCHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCHHHHHHHH QKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMVLLPNPNASRDDYIDGLKLTDAE HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCEEEECCC YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILSRKAGKL EEEEEEECCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCC GVSVGQLTPEQWLEDFYANRRGSGKRKSVKDKEVEDV CCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFSPDSPISEFVSISTHVAPSVLKTTGGDYLLIWHLAGLPFVGRDEFELEQRHNTFNRLV CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH QTLRAPDFANVAFWVHDVRRRRKIGNSGRFKQSFNQALSDEYYAALSSQKIMQNELYFSM HHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYRPVVTGKRLVEKSGDPDKIRVEEEQAIAKVIELATNVEAVLKDYSPYRLGMYEAKNGV HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE VFSETLEFLGYLLNRIDEPVPVLQAPVAAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL EHHHHHHHHHHHHHHCCCCCCHHHCCHHHHCCCHHHHHCCCCCCEEEECCCCCCHHHHHH NVKEYADGTYPGILNGLKYLDFEYVVTHSFSPVGRHDALKVLERTKGMMISSGDKSSSQI HHHHHCCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCHHH RDLDLAMDDVASGNFVLGEYHFTVAVYSDSQEKLARQIATTRAELSNAGFVSSKEDLAIA HHHHHHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH SSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQHNNPWGDAVTTLQTTNGQPYY HHHHHHCCCCEEEEEEECCCCCCCEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCCEEE FNFHATHPAENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPVPTIFFFDKDRGA EEEEECCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC EIFVRACGGNYLALENGSPTGFNPFQCESNEVNTQFLAELIKVLGGKTEYSSREEEDIYR EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH AVGGMLDTPMHLRSMSNFRKSLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRAS HHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCEEECCHHH IIGFDYTDVIDNVEVRVPVINYLLHRLEALIDGRPLIYVMDEFWKILDGEGGLKEFAKNK EECCCHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCHHHHHHHH QKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMVLLPNPNASRDDYIDGLKLTDAE HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCEEEECCC YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILSRKAGKL EEEEEEECCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCC GVSVGQLTPEQWLEDFYANRRGSGKRKSVKDKEVEDV CCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10940027 [H]