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The map label for this gene is virB1 [H]

Identifier: 66767960

GI number: 66767960

Start: 1962696

End: 1963529

Strand: Direct

Name: virB1 [H]

Synonym: XC_1636

Alternate gene names: 66767960

Gene position: 1962696-1963529 (Clockwise)

Preceding gene: 66767959

Following gene: 66767961

Centisome position: 38.12

GC content: 56.0

Gene sequence:

>834_bases
ATGTTGCCTGGCATGGAATTGATGGGATGTACTGGACTTGCCGTACCCGGCGAGGTCATGCAGCATGTCGTGCGCGTTGA
GTCTTCCCGCAATCCGTACGCCATTGGTGTCGTTGGCGGCCGTCTGGCACGCGAACCGCGTGGTTTGGAAGAAGCGGTGG
CCACAGCGAAGATGCTTGAGCAGAAGGGCTACAACTTTTCCTTAGGCCTTGGTCAAGTCAATCGCTACAACCTGCAGAAA
TATGGGCTAACCAGCTATGAGATGGCATTTGCCAAGTGCCCTAACCTCGTGGCGGCATCGAAAATTTTAGCCGAATGTCA
CTCGCGATCCGGCGCCAACTGGGGTAAATCGTTTAGTTGCTATTATTCAGGCAATTTCGAAACCGGCTTCAAGCATGGTT
ATGTCCAGAAGATCTATGCCTCTATTCGTCAGTCGGTGGCATCTTCGGGGAGTGAGCCTATCGCGGTGCTTCCAAGTCGC
CCAATCAAGGTCCGTGTCGAAAATCCCTTGCATCAAACAGCTGCCGAGCTTGCCGACGCCATTGTGGCACGTCGAATTCG
GGATCTCTCAAGTTCCGGGCGCACAGGAAATTCACAGCAGGGCTATATGCTTGCACCTCCTCCGCTTGAGCAACTGCCGC
TTCCGCAAGTATCCCCGGCACGTTCAGCAGAAGACGAGTTTTATGTCGTCAAGGCGACTGGGCAGGGACGGGGGGTTGCA
ATGCCTGCCGGTATGCAGCAGGGGCCAACCGGGAGGGATCAGACGCCCGCTAGCGCGGTGCCAGCGCGACCGGTGCCCGC
AACGCAGGAGACCGACACAGCATTTGTTTTTTAA

Upstream 100 bases:

>100_bases
CCGCTTTATTACTGGGATCGACTTCGATCCGGCAAGAACACTGCGTGGCGGCTGATCGGCCGCCAATGATTGACGTCGAT
CCAGTTTCGAGGAAACCGTT

Downstream 100 bases:

>100_bases
TCAGGATGGAAAACCTGCCAAGGACTGGCTGCTAGACCCCCCCTGTTCCCAAGGAGTTTGACATGAAGTTCGAAATCGAT
AAAAAGTTGGCGGCTGATGC

Product: VirB1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MLPGMELMGCTGLAVPGEVMQHVVRVESSRNPYAIGVVGGRLAREPRGLEEAVATAKMLEQKGYNFSLGLGQVNRYNLQK
YGLTSYEMAFAKCPNLVAASKILAECHSRSGANWGKSFSCYYSGNFETGFKHGYVQKIYASIRQSVASSGSEPIAVLPSR
PIKVRVENPLHQTAAELADAIVARRIRDLSSSGRTGNSQQGYMLAPPPLEQLPLPQVSPARSAEDEFYVVKATGQGRGVA
MPAGMQQGPTGRDQTPASAVPARPVPATQETDTAFVF

Sequences:

>Translated_277_residues
MLPGMELMGCTGLAVPGEVMQHVVRVESSRNPYAIGVVGGRLAREPRGLEEAVATAKMLEQKGYNFSLGLGQVNRYNLQK
YGLTSYEMAFAKCPNLVAASKILAECHSRSGANWGKSFSCYYSGNFETGFKHGYVQKIYASIRQSVASSGSEPIAVLPSR
PIKVRVENPLHQTAAELADAIVARRIRDLSSSGRTGNSQQGYMLAPPPLEQLPLPQVSPARSAEDEFYVVKATGQGRGVA
MPAGMQQGPTGRDQTPASAVPARPVPATQETDTAFVF
>Mature_277_residues
MLPGMELMGCTGLAVPGEVMQHVVRVESSRNPYAIGVVGGRLAREPRGLEEAVATAKMLEQKGYNFSLGLGQVNRYNLQK
YGLTSYEMAFAKCPNLVAASKILAECHSRSGANWGKSFSCYYSGNFETGFKHGYVQKIYASIRQSVASSGSEPIAVLPSR
PIKVRVENPLHQTAAELADAIVARRIRDLSSSGRTGNSQQGYMLAPPPLEQLPLPQVSPARSAEDEFYVVKATGQGRGVA
MPAGMQQGPTGRDQTPASAVPARPVPATQETDTAFVF

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 29707; Mature: 29707

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPGMELMGCTGLAVPGEVMQHVVRVESSRNPYAIGVVGGRLAREPRGLEEAVATAKMLE
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHH
QKGYNFSLGLGQVNRYNLQKYGLTSYEMAFAKCPNLVAASKILAECHSRSGANWGKSFSC
HCCCCEEECCCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEE
YYSGNFETGFKHGYVQKIYASIRQSVASSGSEPIAVLPSRPIKVRVENPLHQTAAELADA
EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHHHHHHHH
IVARRIRDLSSSGRTGNSQQGYMLAPPPLEQLPLPQVSPARSAEDEFYVVKATGQGRGVA
HHHHHHHHHHCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEE
MPAGMQQGPTGRDQTPASAVPARPVPATQETDTAFVF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
>Mature Secondary Structure
MLPGMELMGCTGLAVPGEVMQHVVRVESSRNPYAIGVVGGRLAREPRGLEEAVATAKMLE
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHH
QKGYNFSLGLGQVNRYNLQKYGLTSYEMAFAKCPNLVAASKILAECHSRSGANWGKSFSC
HCCCCEEECCCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEE
YYSGNFETGFKHGYVQKIYASIRQSVASSGSEPIAVLPSRPIKVRVENPLHQTAAELADA
EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHHHHHHHH
IVARRIRDLSSSGRTGNSQQGYMLAPPPLEQLPLPQVSPARSAEDEFYVVKATGQGRGVA
HHHHHHHHHHCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEE
MPAGMQQGPTGRDQTPASAVPARPVPATQETDTAFVF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]