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The map label for this gene is popC [H]

Identifier: 66767877

GI number: 66767877

Start: 1867667

End: 1869277

Strand: Reverse

Name: popC [H]

Synonym: XC_1553

Alternate gene names: 66767877

Gene position: 1869277-1867667 (Counterclockwise)

Preceding gene: 66767879

Following gene: 66767876

Centisome position: 36.31

GC content: 56.49

Gene sequence:

>1611_bases
ATGGATAAAAATCTTAATTTGTGGGATATGAGCACCTTCATCCAGCAGTATGGCGCTCTAACGGCAGATCATCCAACGCA
CACACCCGAAGATAGCCCGCAAACCGTTCCGTCTCCGCGATCGTCCTCAGCACATTCGCCGGAGATTCAGGAGCTAAGAA
GCCTTCAGGAAACGCGGCCTGCCAGGCTTGGAGCGCGCTCCCAATCACGCAGCAGTAAGCACGGCCTTCAGCAGTGCTCC
TCCTCGCCCAGCGACGAAAGTTTTCGTCTGCACGCTGAGTTGGCAGCCTGGTGCGAGCGCGTTGAGACTAAACCCTCACT
ACTTGCCAAACTGGGTTGTTGTGCTGCGCCCCCAGTAGTGGGCGATCATCGCGAACAGCGCCGCGAAGCCATGGAGCGGA
TTATGCGCTGCTTAGATGCGGGACAAGCTGGAACGCAGCTGACACTCAGGGACCTCAACCTGTCGCAGCTGCCGCCTGGA
CTGCACCGCCTTGCGCACCTACGAGACCTCGACGTGGCGGACAACGTGAACCTCACGCGTCTGCCAGAAGACTTGAGCCT
TTGCAAACACCTTGAGCGGATCAACGCTGACGGTTGCTCCATTGCGGCACTGCCATCGAAAATCGGTGCACTCAAGAATC
TAAGTGAGATTTCTCTCGCGTTCAATGAACTGAGAACCCTTCCAGATTCGATTGGCCAATGCAGCAGCCTGACTACGATT
GTGGTGCCCGGTTGCAAGATCAATAAATTGCCTGCAAGCCTTGCCAACTTGACGCAGCTGAAAAAGCTGGATGTTGCAGC
CAATATTGAACTGAGTGAGCTGTCGCCGCATATGAACCTGGACGATGTAGCTGTGCACAGCACACAGACGCGATTGGGAT
TGATGCACCGAATATTCAAGGCGCCGACGTTCGATCCAGAGACCAGACAGAGGTTGTCCTACCAAGCTTCAGCGCTGCGC
GACCGGTGGGCCGCGCTATCGCATCATCTATCGCCGCAAGCGCGAGCACGGGTTGATCAAATGCGTGAGGGTGCATCGAC
CACACTTTCCAGTCAAGATCACAAAGCCTCCACCGCGTGGAAGACTGCCACAGAGAAGGTCAGCAGTTGGGCAGAGGAAG
GGGCACCGATCACACTTGATCGGATTTTCAAACTAAACCAACTGCTGCTCCCCGAGGGGGATGATGATAATGACCCAATT
GGCGGCCAACTGCGCAAGGTCGGCATACAAGCTGCCCCTAGCAATACATGGACGGAGTGTCGGTACCCTCCGCCCGAGAC
CCTGAAAGACGAAATGGCGAAGTTTTCCGGATGGCTCGAACATAGTGAACAGCAAGCGCATGCGCGTGACGCGTTGGGAC
ATATCGAGTTTGCCGCACAGCTTCACCAGCGCTTGGTCAGTCTGCATCCTTTCGATGACGCAAATGGCCGGACAGCGCGT
CTTGCGATGGATTGGGCGCTGCAACGGCACGGTTTGCCGCCTGCCCCGCCCGTTGGTGAAGCAAGCCGCCTGCCAGCGTC
ATTTCTTGGGGGAAAGCGCGTCAGTCCGGAGAAGGTTGTCTTGGAAACGCTGGAGGGTATTGCCACGGTTATGAACCAGG
TTCACCAGTAG

Upstream 100 bases:

>100_bases
CCCCCAGTTCACTTTGAAAGCCGAATCTTCGCAATTCTGTTTGATGCTCGATTTTGTTTTCGATTACGTTTGATTAAACA
TAAAAACTAGTTCTTCATCG

Downstream 100 bases:

>100_bases
ACCTACACGCCTCAATGCTCAGAACTGCGGCAAGTGCGGCCCGCGGCTGTTCCAACGCGGACCACGGCTTCCGTTGGCTC
AATTACGCCAGCGGCGGCAC

Product: leucin rich protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MDKNLNLWDMSTFIQQYGALTADHPTHTPEDSPQTVPSPRSSSAHSPEIQELRSLQETRPARLGARSQSRSSKHGLQQCS
SSPSDESFRLHAELAAWCERVETKPSLLAKLGCCAAPPVVGDHREQRREAMERIMRCLDAGQAGTQLTLRDLNLSQLPPG
LHRLAHLRDLDVADNVNLTRLPEDLSLCKHLERINADGCSIAALPSKIGALKNLSEISLAFNELRTLPDSIGQCSSLTTI
VVPGCKINKLPASLANLTQLKKLDVAANIELSELSPHMNLDDVAVHSTQTRLGLMHRIFKAPTFDPETRQRLSYQASALR
DRWAALSHHLSPQARARVDQMREGASTTLSSQDHKASTAWKTATEKVSSWAEEGAPITLDRIFKLNQLLLPEGDDDNDPI
GGQLRKVGIQAAPSNTWTECRYPPPETLKDEMAKFSGWLEHSEQQAHARDALGHIEFAAQLHQRLVSLHPFDDANGRTAR
LAMDWALQRHGLPPAPPVGEASRLPASFLGGKRVSPEKVVLETLEGIATVMNQVHQ

Sequences:

>Translated_536_residues
MDKNLNLWDMSTFIQQYGALTADHPTHTPEDSPQTVPSPRSSSAHSPEIQELRSLQETRPARLGARSQSRSSKHGLQQCS
SSPSDESFRLHAELAAWCERVETKPSLLAKLGCCAAPPVVGDHREQRREAMERIMRCLDAGQAGTQLTLRDLNLSQLPPG
LHRLAHLRDLDVADNVNLTRLPEDLSLCKHLERINADGCSIAALPSKIGALKNLSEISLAFNELRTLPDSIGQCSSLTTI
VVPGCKINKLPASLANLTQLKKLDVAANIELSELSPHMNLDDVAVHSTQTRLGLMHRIFKAPTFDPETRQRLSYQASALR
DRWAALSHHLSPQARARVDQMREGASTTLSSQDHKASTAWKTATEKVSSWAEEGAPITLDRIFKLNQLLLPEGDDDNDPI
GGQLRKVGIQAAPSNTWTECRYPPPETLKDEMAKFSGWLEHSEQQAHARDALGHIEFAAQLHQRLVSLHPFDDANGRTAR
LAMDWALQRHGLPPAPPVGEASRLPASFLGGKRVSPEKVVLETLEGIATVMNQVHQ
>Mature_536_residues
MDKNLNLWDMSTFIQQYGALTADHPTHTPEDSPQTVPSPRSSSAHSPEIQELRSLQETRPARLGARSQSRSSKHGLQQCS
SSPSDESFRLHAELAAWCERVETKPSLLAKLGCCAAPPVVGDHREQRREAMERIMRCLDAGQAGTQLTLRDLNLSQLPPG
LHRLAHLRDLDVADNVNLTRLPEDLSLCKHLERINADGCSIAALPSKIGALKNLSEISLAFNELRTLPDSIGQCSSLTTI
VVPGCKINKLPASLANLTQLKKLDVAANIELSELSPHMNLDDVAVHSTQTRLGLMHRIFKAPTFDPETRQRLSYQASALR
DRWAALSHHLSPQARARVDQMREGASTTLSSQDHKASTAWKTATEKVSSWAEEGAPITLDRIFKLNQLLLPEGDDDNDPI
GGQLRKVGIQAAPSNTWTECRYPPPETLKDEMAKFSGWLEHSEQQAHARDALGHIEFAAQLHQRLVSLHPFDDANGRTAR
LAMDWALQRHGLPPAPPVGEASRLPASFLGGKRVSPEKVVLETLEGIATVMNQVHQ

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI95113664, Length=126, Percent_Identity=37.3015873015873, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI8923909, Length=144, Percent_Identity=31.25, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI110825984, Length=124, Percent_Identity=37.9032258064516, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI45827729, Length=143, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI45827731, Length=143, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI55770895, Length=144, Percent_Identity=31.25, Blast_Score=70, Evalue=7e-12,
Organism=Homo sapiens, GI16904383, Length=145, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI299758423, Length=105, Percent_Identity=36.1904761904762, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI53729363, Length=105, Percent_Identity=36.1904761904762, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI53729359, Length=105, Percent_Identity=36.1904761904762, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI53729361, Length=105, Percent_Identity=36.1904761904762, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI190014581, Length=115, Percent_Identity=31.304347826087, Blast_Score=67, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71991531, Length=130, Percent_Identity=33.8461538461538, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI281362657, Length=127, Percent_Identity=33.8582677165354, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281362651, Length=127, Percent_Identity=33.8582677165354, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281362653, Length=127, Percent_Identity=33.8582677165354, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281362655, Length=127, Percent_Identity=33.8582677165354, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007092, Length=127, Percent_Identity=33.8582677165354, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650334, Length=127, Percent_Identity=33.8582677165354, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650332, Length=127, Percent_Identity=33.8582677165354, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650330, Length=127, Percent_Identity=33.8582677165354, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI62472958, Length=127, Percent_Identity=33.8582677165354, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650336, Length=127, Percent_Identity=33.8582677165354, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 59041; Mature: 59041

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKNLNLWDMSTFIQQYGALTADHPTHTPEDSPQTVPSPRSSSAHSPEIQELRSLQETRP
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCH
ARLGARSQSRSSKHGLQQCSSSPSDESFRLHAELAAWCERVETKPSLLAKLGCCAAPPVV
HHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
GDHREQRREAMERIMRCLDAGQAGTQLTLRDLNLSQLPPGLHRLAHLRDLDVADNVNLTR
CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCHHC
LPEDLSLCKHLERINADGCSIAALPSKIGALKNLSEISLAFNELRTLPDSIGQCSSLTTI
CCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
VVPGCKINKLPASLANLTQLKKLDVAANIELSELSPHMNLDDVAVHSTQTRLGLMHRIFK
EECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
APTFDPETRQRLSYQASALRDRWAALSHHLSPQARARVDQMREGASTTLSSQDHKASTAW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHH
KTATEKVSSWAEEGAPITLDRIFKLNQLLLPEGDDDNDPIGGQLRKVGIQAAPSNTWTEC
HHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCEECCCCCCCCC
RYPPPETLKDEMAKFSGWLEHSEQQAHARDALGHIEFAAQLHQRLVSLHPFDDANGRTAR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LAMDWALQRHGLPPAPPVGEASRLPASFLGGKRVSPEKVVLETLEGIATVMNQVHQ
HHHHHHHHHCCCCCCCCCCCHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKNLNLWDMSTFIQQYGALTADHPTHTPEDSPQTVPSPRSSSAHSPEIQELRSLQETRP
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCH
ARLGARSQSRSSKHGLQQCSSSPSDESFRLHAELAAWCERVETKPSLLAKLGCCAAPPVV
HHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
GDHREQRREAMERIMRCLDAGQAGTQLTLRDLNLSQLPPGLHRLAHLRDLDVADNVNLTR
CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCHHC
LPEDLSLCKHLERINADGCSIAALPSKIGALKNLSEISLAFNELRTLPDSIGQCSSLTTI
CCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
VVPGCKINKLPASLANLTQLKKLDVAANIELSELSPHMNLDDVAVHSTQTRLGLMHRIFK
EECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
APTFDPETRQRLSYQASALRDRWAALSHHLSPQARARVDQMREGASTTLSSQDHKASTAW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHH
KTATEKVSSWAEEGAPITLDRIFKLNQLLLPEGDDDNDPIGGQLRKVGIQAAPSNTWTEC
HHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCEECCCCCCCCC
RYPPPETLKDEMAKFSGWLEHSEQQAHARDALGHIEFAAQLHQRLVSLHPFDDANGRTAR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LAMDWALQRHGLPPAPPVGEASRLPASFLGGKRVSPEKVVLETLEGIATVMNQVHQ
HHHHHHHHHCCCCCCCCCCCHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]