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The map label for this gene is 66767865

Identifier: 66767865

GI number: 66767865

Start: 1849326

End: 1850012

Strand: Direct

Name: 66767865

Synonym: XC_1541

Alternate gene names: NA

Gene position: 1849326-1850012 (Clockwise)

Preceding gene: 66767864

Following gene: 77761152

Centisome position: 35.92

GC content: 65.36

Gene sequence:

>687_bases
ATGCTGCCCCAACTGCCGCCCGTCACCAAAGCCCTGCTGATCGCCAATCTCGGCATGTTCATCCTGCAATGGGCGCTGGG
TGACCTGGGTGCCGGCCTGCTGCCGTCCGATGCAGCGCTGTCGCCGCTGATGTTGTGGCCGCTCTCCAATGGCTTCGATG
CGTTCTCGCCGGGTGCCAGCTTCATGCCGTGGCAGCTGCTGACCTATGCGTTTCTGCATGGCGGGTTCAACCATCTGTTC
TTCAACATGCTGGCGCTTTTCATGTTCGGCGCGCCGCTGGAACAGACCTGGGGCCAGAAGCGATTCCTGACGTATTACCT
GGTGTGCGTGGCCGGCGCCGGCGTGTGCCAGCTGCTGATGGCCTGGTTCACCCAGAGCGGGGCACCGGTGCTGGGCGCGT
CTGGCGGGGTGTTCGGCTTGTTGCTCGCCTACGGCATGCTGTTCCCGAACCAGCGGGTGATGCTGCTGTTTCCACCGATC
CCGATGAAGGCACGGACCTTCGTGATCGTGTTCGGTGCGATCGAGCTGCTGCTTGGCGCCACCGGTTGGCAGCCCGGCGT
TGCCCACTTTGCGCACCTGGGCGGCATGCTGTTCGGGTGGCTGTTGATCCGCCACTGGCGCGGCCAGCCGCCGTTTGGTG
GCAAGCGCGGCAAGGGGCGCAAGCCGCCGCTGCGTGTGGTGCGCTGA

Upstream 100 bases:

>100_bases
GGGTACGGCGTGCCACTGCAGCGCAACGGCTGGATGCGGCCGTGTGGGGTCCTTCATAAGCCTGCCGTTATGATGAGCGG
CAGTCCCGAAGGATGCCGCC

Downstream 100 bases:

>100_bases
ATCAAGCGACGCAATGCGCTGTGAACCTGTAGGCGCGGCCTTGGCCGCGACGGGGTTTGTCGGTAACGCTCCATCGCGGC
CAAGGCCGCTCCTACAAAGC

Product: integral membrane protein

Products: NA

Alternate protein names: Peptidase; Rhomboid-Like Protein; Transmembrane Rhomboid Family Protein; Integral Membrane Protein; Cytoplasmic Membrane Protein; S54 Family Peptidase; Rhomboid Protein; Rhomboid Family Membrane Protein; Peptidase Protein; Membrane Serine Protease; GlpG Protein; Serine Protease; Rhomboid Serine Protease; GlpG-Like Protein; Intramembrane Protease

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MLPQLPPVTKALLIANLGMFILQWALGDLGAGLLPSDAALSPLMLWPLSNGFDAFSPGASFMPWQLLTYAFLHGGFNHLF
FNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLMAWFTQSGAPVLGASGGVFGLLLAYGMLFPNQRVMLLFPPI
PMKARTFVIVFGAIELLLGATGWQPGVAHFAHLGGMLFGWLLIRHWRGQPPFGGKRGKGRKPPLRVVR

Sequences:

>Translated_228_residues
MLPQLPPVTKALLIANLGMFILQWALGDLGAGLLPSDAALSPLMLWPLSNGFDAFSPGASFMPWQLLTYAFLHGGFNHLF
FNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLMAWFTQSGAPVLGASGGVFGLLLAYGMLFPNQRVMLLFPPI
PMKARTFVIVFGAIELLLGATGWQPGVAHFAHLGGMLFGWLLIRHWRGQPPFGGKRGKGRKPPLRVVR
>Mature_228_residues
MLPQLPPVTKALLIANLGMFILQWALGDLGAGLLPSDAALSPLMLWPLSNGFDAFSPGASFMPWQLLTYAFLHGGFNHLF
FNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLMAWFTQSGAPVLGASGGVFGLLLAYGMLFPNQRVMLLFPPI
PMKARTFVIVFGAIELLLGATGWQPGVAHFAHLGGMLFGWLLIRHWRGQPPFGGKRGKGRKPPLRVVR

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24902; Mature: 24902

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPQLPPVTKALLIANLGMFILQWALGDLGAGLLPSDAALSPLMLWPLSNGFDAFSPGAS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
FMPWQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLM
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AWFTQSGAPVLGASGGVFGLLLAYGMLFPNQRVMLLFPPIPMKARTFVIVFGAIELLLGA
HHHHCCCCCEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
TGWQPGVAHFAHLGGMLFGWLLIRHWRGQPPFGGKRGKGRKPPLRVVR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLPQLPPVTKALLIANLGMFILQWALGDLGAGLLPSDAALSPLMLWPLSNGFDAFSPGAS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
FMPWQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLM
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AWFTQSGAPVLGASGGVFGLLLAYGMLFPNQRVMLLFPPIPMKARTFVIVFGAIELLLGA
HHHHCCCCCEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
TGWQPGVAHFAHLGGMLFGWLLIRHWRGQPPFGGKRGKGRKPPLRVVR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA