| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is yxaH [H]
Identifier: 66767861
GI number: 66767861
Start: 1844818
End: 1846062
Strand: Direct
Name: yxaH [H]
Synonym: XC_1537
Alternate gene names: 66767861
Gene position: 1844818-1846062 (Clockwise)
Preceding gene: 66767860
Following gene: 66767862
Centisome position: 35.83
GC content: 66.18
Gene sequence:
>1245_bases ATGACCGAGCGTTCTGTATTGTTGCCAATTGCCGCGACCGAGCGGATTGCGGTGCTGGATGTGCTGCGCGGTTTCGCGCT GCTGGGCATCTTGCTGATGAACATCGAAGGCTTCGTCGGCCCGCTGGACCTGGCGGTGACTGGCGTCGATCCGCACTGGC ATGGCCTGGGCCGCGTGGTCGATGCGCTGACCTATGTATTCGTGCAGGGCAAGTTCTACACCTTGTTCTCGCTGTTGTTC GGCATGGGCTTTGCGGTGATGGCGCAACGCGCCCAACACGCGCAGCGCCCGTTCCTGGGCATGTATCTGCGCCGCAGTGC CGGCCTGCTGGTGATCGGTCTTGCCCATGCGGTGCTGCTTTGGTCGGGCGATGTGCTGGTGACCTATGCGCTGCTGGCGC TGCTGTTGCTGGCCACCCGCTCCGTGCCCACGGCCACGCTGCCGTGGTTTGCGGTGTTCGTGTACCTGTGTGCGCCGGGG TTGATCCTGCTCTATGGCGCGGTGGGTGCGCTGGCCCAGGCGGATCCCGCCGCCGCGGCCGAGTGGAACGCGGCGATGCG CGAGGTGGCGCAGCAGGCGGTGGCCAATGTGCAGGCGCAGCGCAGTGCGCTGGGCAGCGGCACCTATGTGCAGGCCACCG TGCAGCGTTGGCACGATCTGCGCGAGGCCTTGATCGCGCTGACCATCAACGGCCCGGCCATGCTCGGGATGTTCCTGCTG GGTGGCTGGTTTGTGCGCAGCGGGGCGATTGCCGCGCCCGAGCGCTTTGTGCGTCTGTTCGGTTGGCTGCGTTACGGCGT GTTGCCACTGGGTCTGGCGTTGATGCTGGTGAGCTACCGGCTGGAGCCGTGGATGGACCCGGCCCGGCTGGATCCGCGGC TGTCGTTGGCGTTCGCGCTGGCACTGCTGGGCGGGGCGATGATGTGCCTGGGCTATGCGGCCTGGGTGATGCGTTTTGCA GCGCAGCTGCGCTGGCTGGCACCGGCCGGGCGCATGGCCTTGAGCAACTATCTGCTGCAGTCGCTGCTGTGTACGAGCAT CTTCTACGGCTATGGCCTGGGCTATTTCGAACAGTTGCCACGTGCCTGGCAACCGCCATTTGCGCTGCTGGTCTTTGCAG TGCAGGTGGCACTGAGCCACTTGTGGTTGCGCTGGTTCCGCTTCGGTCCGGTGGAGTGGCTGTGGCGCTGCGTGACCTAC CTGCAGGTGCCGCCACTGCGGCGTCATGCTGGCGCTGCGGGCTGA
Upstream 100 bases:
>100_bases CCACCACTGAGTCACCGCTGTGCATCCTGACGGCCCGCCTCTTCGGCGGGCCGTTTGCATTGTGCGACCTGCTGTGTCGC CTGCCGTTACCCGGGTTTCG
Downstream 100 bases:
>100_bases CGCATGAGCAACGCACGCGTGGATGTGGTGGTCATCGGCGCCGGTGCAATCGGGCTGGCCACCGCGCGTGCGTTGGTCGG TGCCGGCCGGCAGGTGCAGG
Product: transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MTERSVLLPIAATERIAVLDVLRGFALLGILLMNIEGFVGPLDLAVTGVDPHWHGLGRVVDALTYVFVQGKFYTLFSLLF GMGFAVMAQRAQHAQRPFLGMYLRRSAGLLVIGLAHAVLLWSGDVLVTYALLALLLLATRSVPTATLPWFAVFVYLCAPG LILLYGAVGALAQADPAAAAEWNAAMREVAQQAVANVQAQRSALGSGTYVQATVQRWHDLREALIALTINGPAMLGMFLL GGWFVRSGAIAAPERFVRLFGWLRYGVLPLGLALMLVSYRLEPWMDPARLDPRLSLAFALALLGGAMMCLGYAAWVMRFA AQLRWLAPAGRMALSNYLLQSLLCTSIFYGYGLGYFEQLPRAWQPPFALLVFAVQVALSHLWLRWFRFGPVEWLWRCVTY LQVPPLRRHAGAAG
Sequences:
>Translated_414_residues MTERSVLLPIAATERIAVLDVLRGFALLGILLMNIEGFVGPLDLAVTGVDPHWHGLGRVVDALTYVFVQGKFYTLFSLLF GMGFAVMAQRAQHAQRPFLGMYLRRSAGLLVIGLAHAVLLWSGDVLVTYALLALLLLATRSVPTATLPWFAVFVYLCAPG LILLYGAVGALAQADPAAAAEWNAAMREVAQQAVANVQAQRSALGSGTYVQATVQRWHDLREALIALTINGPAMLGMFLL GGWFVRSGAIAAPERFVRLFGWLRYGVLPLGLALMLVSYRLEPWMDPARLDPRLSLAFALALLGGAMMCLGYAAWVMRFA AQLRWLAPAGRMALSNYLLQSLLCTSIFYGYGLGYFEQLPRAWQPPFALLVFAVQVALSHLWLRWFRFGPVEWLWRCVTY LQVPPLRRHAGAAG >Mature_413_residues TERSVLLPIAATERIAVLDVLRGFALLGILLMNIEGFVGPLDLAVTGVDPHWHGLGRVVDALTYVFVQGKFYTLFSLLFG MGFAVMAQRAQHAQRPFLGMYLRRSAGLLVIGLAHAVLLWSGDVLVTYALLALLLLATRSVPTATLPWFAVFVYLCAPGL ILLYGAVGALAQADPAAAAEWNAAMREVAQQAVANVQAQRSALGSGTYVQATVQRWHDLREALIALTINGPAMLGMFLLG GWFVRSGAIAAPERFVRLFGWLRYGVLPLGLALMLVSYRLEPWMDPARLDPRLSLAFALALLGGAMMCLGYAAWVMRFAA QLRWLAPAGRMALSNYLLQSLLCTSIFYGYGLGYFEQLPRAWQPPFALLVFAVQVALSHLWLRWFRFGPVEWLWRCVTYL QVPPLRRHAGAAG
Specific function: Involved in transport (Potential) [H]
COG id: COG2311
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788475, Length=398, Percent_Identity=30.9045226130653, Blast_Score=123, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007349 [H]
Pfam domain/function: PF04235 DUF418 [H]
EC number: NA
Molecular weight: Translated: 45536; Mature: 45404
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTERSVLLPIAATERIAVLDVLRGFALLGILLMNIEGFVGPLDLAVTGVDPHWHGLGRVV CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHH DALTYVFVQGKFYTLFSLLFGMGFAVMAQRAQHAQRPFLGMYLRRSAGLLVIGLAHAVLL HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEHHHHHHHHHH WSGDVLVTYALLALLLLATRSVPTATLPWFAVFVYLCAPGLILLYGAVGALAQADPAAAA HCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH EWNAAMREVAQQAVANVQAQRSALGSGTYVQATVQRWHDLREALIALTINGPAMLGMFLL HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHH GGWFVRSGAIAAPERFVRLFGWLRYGVLPLGLALMLVSYRLEPWMDPARLDPRLSLAFAL HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHH ALLGGAMMCLGYAAWVMRFAAQLRWLAPAGRMALSNYLLQSLLCTSIFYGYGLGYFEQLP HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC RAWQPPFALLVFAVQVALSHLWLRWFRFGPVEWLWRCVTYLQVPPLRRHAGAAG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCC >Mature Secondary Structure TERSVLLPIAATERIAVLDVLRGFALLGILLMNIEGFVGPLDLAVTGVDPHWHGLGRVV CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHH DALTYVFVQGKFYTLFSLLFGMGFAVMAQRAQHAQRPFLGMYLRRSAGLLVIGLAHAVLL HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEHHHHHHHHHH WSGDVLVTYALLALLLLATRSVPTATLPWFAVFVYLCAPGLILLYGAVGALAQADPAAAA HCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH EWNAAMREVAQQAVANVQAQRSALGSGTYVQATVQRWHDLREALIALTINGPAMLGMFLL HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHH GGWFVRSGAIAAPERFVRLFGWLRYGVLPLGLALMLVSYRLEPWMDPARLDPRLSLAFAL HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHH ALLGGAMMCLGYAAWVMRFAAQLRWLAPAGRMALSNYLLQSLLCTSIFYGYGLGYFEQLP HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC RAWQPPFALLVFAVQVALSHLWLRWFRFGPVEWLWRCVTYLQVPPLRRHAGAAG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584049; 9384377 [H]