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The map label for this gene is ybbN [H]

Identifier: 66767821

GI number: 66767821

Start: 1799698

End: 1800555

Strand: Reverse

Name: ybbN [H]

Synonym: XC_1495

Alternate gene names: 66767821

Gene position: 1800555-1799698 (Counterclockwise)

Preceding gene: 66767828

Following gene: 66767820

Centisome position: 34.97

GC content: 66.78

Gene sequence:

>858_bases
ATGTCCGACAAAGCGCATGTATTCGATGTCACCACCGACACCTTCGAGACCGAGGTCCTGCAGAAATCGTTGACGACACC
GGTGCTGGTGGACTTCTGGGCCACCTGGTGCGGGCCGTGCAAATCACTGACCCCGATCCTTGAAAAGCTGGCAGCCGACT
ACAACGGCGCCTTCGAGCTGGCCAAGGTCGACGTGGACAAGGAGCAGCAGATCGCTGCGGCCTTCCAGATCCGTTCGGTT
CCCACCGTGTTCCTGGTCAAGGGTGGCGAACTGGTGGACGGCTTCCCGGGCGCCATGCCGGAAGGCCAGATCCGCGAGTT
CCTGACCCAGCACGGCGTGCTGCCGGCCGAGCCGCAGGTGGCCGAAGAGGTTCCGCTGGCACCGCTGGACCCGCAGGCGC
AGGTCGCCGCGCTACGCGAGGCAATCGCCGCCGAGCCGGACAAGGACGAACTCAAGCTGGACCTGGCGCTGGCGCTGCTC
AAGACCGGCGACACGCTCGAGGCCGAGCAGTTGATCGACGCCCTGCCCGCCAACCTGGCCACCGACGACCGCGCCGTGCG
CGCCAAGGCGCGACTGGGCTTTGCGAACGTGCTCAAGGATGCGCCCGACGCCGCCGCTCTGCAGACTACGGTGGCCGCCG
ATGGCAGCGACCTGCACGCGCGCCATCTGCTCGGGGTCCGTCACCTGCTCGACGGCGACGACGAAGCGGCGCTGGAGCAG
TTTCTGGAAATGCTGCGCCAGAACCGCGGTTTCGAGGACAACCTGCCGCGCCGCAGCCTGATCGACGCGTTCCGCGTGAT
CGAGGACGAAGACCTGGTGGGCCGCTACCGCCGCAAGATGTCGGCGCTGTTGTTCTGA

Upstream 100 bases:

>100_bases
CGGGCGCGGCGTGAACCCCTGGCGGCGGCAATGCTGGCCTTGTCTGGGCCGGGTTTGCCACCATTACGGTCCACTGTTGC
CGTCATTCTCCTGGAAACCC

Downstream 100 bases:

>100_bases
TCCCTGCGCGCTGCAGATGCCGGCCGGCGCGGACGCATCTGCAGCGCGACGTGCCTTCGGCATTACTCCATACGCATACG
AATGTTATTCTCGGCGCTGG

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSDKAHVFDVTTDTFETEVLQKSLTTPVLVDFWATWCGPCKSLTPILEKLAADYNGAFELAKVDVDKEQQIAAAFQIRSV
PTVFLVKGGELVDGFPGAMPEGQIREFLTQHGVLPAEPQVAEEVPLAPLDPQAQVAALREAIAAEPDKDELKLDLALALL
KTGDTLEAEQLIDALPANLATDDRAVRAKARLGFANVLKDAPDAAALQTTVAADGSDLHARHLLGVRHLLDGDDEAALEQ
FLEMLRQNRGFEDNLPRRSLIDAFRVIEDEDLVGRYRRKMSALLF

Sequences:

>Translated_285_residues
MSDKAHVFDVTTDTFETEVLQKSLTTPVLVDFWATWCGPCKSLTPILEKLAADYNGAFELAKVDVDKEQQIAAAFQIRSV
PTVFLVKGGELVDGFPGAMPEGQIREFLTQHGVLPAEPQVAEEVPLAPLDPQAQVAALREAIAAEPDKDELKLDLALALL
KTGDTLEAEQLIDALPANLATDDRAVRAKARLGFANVLKDAPDAAALQTTVAADGSDLHARHLLGVRHLLDGDDEAALEQ
FLEMLRQNRGFEDNLPRRSLIDAFRVIEDEDLVGRYRRKMSALLF
>Mature_284_residues
SDKAHVFDVTTDTFETEVLQKSLTTPVLVDFWATWCGPCKSLTPILEKLAADYNGAFELAKVDVDKEQQIAAAFQIRSVP
TVFLVKGGELVDGFPGAMPEGQIREFLTQHGVLPAEPQVAEEVPLAPLDPQAQVAALREAIAAEPDKDELKLDLALALLK
TGDTLEAEQLIDALPANLATDDRAVRAKARLGFANVLKDAPDAAALQTTVAADGSDLHARHLLGVRHLLDGDDEAALEQF
LEMLRQNRGFEDNLPRRSLIDAFRVIEDEDLVGRYRRKMSALLF

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=85, Percent_Identity=47.0588235294118, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI87081747, Length=275, Percent_Identity=34.5454545454545, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI87082331, Length=108, Percent_Identity=43.5185185185185, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1788936, Length=119, Percent_Identity=33.6134453781513, Blast_Score=90, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI212646193, Length=109, Percent_Identity=41.2844036697248, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71980565, Length=84, Percent_Identity=32.1428571428571, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71980562, Length=84, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17509965, Length=86, Percent_Identity=37.2093023255814, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17507705, Length=96, Percent_Identity=32.2916666666667, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6321648, Length=73, Percent_Identity=45.2054794520548, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323072, Length=90, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573567, Length=118, Percent_Identity=34.7457627118644, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24639826, Length=91, Percent_Identity=35.1648351648352, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24664269, Length=74, Percent_Identity=41.8918918918919, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21358065, Length=106, Percent_Identity=34.9056603773585, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17648013, Length=79, Percent_Identity=41.7721518987342, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24583090, Length=79, Percent_Identity=41.7721518987342, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17530795, Length=71, Percent_Identity=35.2112676056338, Blast_Score=68, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31192; Mature: 31061

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKAHVFDVTTDTFETEVLQKSLTTPVLVDFWATWCGPCKSLTPILEKLAADYNGAFEL
CCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEE
AKVDVDKEQQIAAAFQIRSVPTVFLVKGGELVDGFPGAMPEGQIREFLTQHGVLPAEPQV
EEECCCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCH
AEEVPLAPLDPQAQVAALREAIAAEPDKDELKLDLALALLKTGDTLEAEQLIDALPANLA
HHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
TDDRAVRAKARLGFANVLKDAPDAAALQTTVAADGSDLHARHLLGVRHLLDGDDEAALEQ
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
FLEMLRQNRGFEDNLPRRSLIDAFRVIEDEDLVGRYRRKMSALLF
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDKAHVFDVTTDTFETEVLQKSLTTPVLVDFWATWCGPCKSLTPILEKLAADYNGAFEL
CCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEE
AKVDVDKEQQIAAAFQIRSVPTVFLVKGGELVDGFPGAMPEGQIREFLTQHGVLPAEPQV
EEECCCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCH
AEEVPLAPLDPQAQVAALREAIAAEPDKDELKLDLALALLKTGDTLEAEQLIDALPANLA
HHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
TDDRAVRAKARLGFANVLKDAPDAAALQTTVAADGSDLHARHLLGVRHLLDGDDEAALEQ
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
FLEMLRQNRGFEDNLPRRSLIDAFRVIEDEDLVGRYRRKMSALLF
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]