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The map label for this gene is rpoE [C]

Identifier: 66767800

GI number: 66767800

Start: 1773051

End: 1773551

Strand: Reverse

Name: rpoE [C]

Synonym: XC_1474

Alternate gene names: 66767800

Gene position: 1773551-1773051 (Counterclockwise)

Preceding gene: 77761151

Following gene: 66767799

Centisome position: 34.45

GC content: 65.87

Gene sequence:

>501_bases
ATGCCCCAACAAACAGACCTGCACGCCCGCTTCAGTGCTCTGATGCAGCAGCACCGAGGCATCGTGCTCAAGGTCGCGGC
GAGCTATTGCCGGGATCCGGATGACCGCGCCGATCTGGCCCAGGACATCGCCACGCACCTGTGGCGGGCCTTCCCCAGCT
ACGACCCGCACCGCCGTTTTTCCACCTGGATGTACCGCATCGCGTTGAACGTGGCGATCAGCGACTTGCGCAGCCGCCGG
CATGCCCCTAGCGAGGTGCTCGATGTGGGCACGCTGGTCGACAGCATTGCCGACCCGCATGCCCGCGACCCGGCGCGCGA
ACACCAGCTCACCGCGCTCTACACCTTCATCGCGCAGCTGCCACGGCTGGAGCGCGCGTTGATGCTGCTCTACCTGGACG
ACCACAGCTACCGCGAGATCGCCGATGTGCTGGGCATCAGCGAAACCAACGTGGCCACGAAGCTCAGCCGCCTGAAAGCG
CGCATCCGCGCCGAACTGTGA

Upstream 100 bases:

>100_bases
TGTCGAAGGTTCGTGACAGTTTGTTCAGGTTGTGAGGATTTTCACCCTCCCGGCGAATCATCCAGACATGCCCTCCTCGC
CCACCCACGCCGCCGTTCCC

Downstream 100 bases:

>100_bases
CCTTTCCCCTTGTGCAACCGGAGCAACCCCATGGAACTGGATGACATGAAACATGCCTGGCAGACGCTGGAACAGCGCCT
GGATCAGCAGGCTGCACAGA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-24 Factor; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Ecf-Type Sigma Factor; ECF Family RNA Polymerase Sigma Factor W; Membrane-Anchored Sigma Factor; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPQQTDLHARFSALMQQHRGIVLKVAASYCRDPDDRADLAQDIATHLWRAFPSYDPHRRFSTWMYRIALNVAISDLRSRR
HAPSEVLDVGTLVDSIADPHARDPAREHQLTALYTFIAQLPRLERALMLLYLDDHSYREIADVLGISETNVATKLSRLKA
RIRAEL

Sequences:

>Translated_166_residues
MPQQTDLHARFSALMQQHRGIVLKVAASYCRDPDDRADLAQDIATHLWRAFPSYDPHRRFSTWMYRIALNVAISDLRSRR
HAPSEVLDVGTLVDSIADPHARDPAREHQLTALYTFIAQLPRLERALMLLYLDDHSYREIADVLGISETNVATKLSRLKA
RIRAEL
>Mature_165_residues
PQQTDLHARFSALMQQHRGIVLKVAASYCRDPDDRADLAQDIATHLWRAFPSYDPHRRFSTWMYRIALNVAISDLRSRRH
APSEVLDVGTLVDSIADPHARDPAREHQLTALYTFIAQLPRLERALMLLYLDDHSYREIADVLGISETNVATKLSRLKAR
IRAEL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19057; Mature: 18926

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQQTDLHARFSALMQQHRGIVLKVAASYCRDPDDRADLAQDIATHLWRAFPSYDPHRRF
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
STWMYRIALNVAISDLRSRRHAPSEVLDVGTLVDSIADPHARDPAREHQLTALYTFIAQL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
PRLERALMLLYLDDHSYREIADVLGISETNVATKLSRLKARIRAEL
HHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PQQTDLHARFSALMQQHRGIVLKVAASYCRDPDDRADLAQDIATHLWRAFPSYDPHRRF
CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
STWMYRIALNVAISDLRSRRHAPSEVLDVGTLVDSIADPHARDPAREHQLTALYTFIAQL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
PRLERALMLLYLDDHSYREIADVLGISETNVATKLSRLKARIRAEL
HHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA