| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is yjiY [H]
Identifier: 66767724
GI number: 66767724
Start: 1686326
End: 1688398
Strand: Reverse
Name: yjiY [H]
Synonym: XC_1398
Alternate gene names: 66767724
Gene position: 1688398-1686326 (Counterclockwise)
Preceding gene: 66767727
Following gene: 66767723
Centisome position: 32.79
GC content: 64.83
Gene sequence:
>2073_bases ATGAAAGGTATCTCGAAGCTGGCCTGGGGCGCGCTGGCGCTGCTGGCCGCGTTCTGCTTGGGCACCGTGGCGCTGCGGCG CGGCGAACACATCAACGCGTTGTGGATCGTGGTGGCGGCGGTGTCGATCTATCTGATCGCCTACCGCTTCTATGGCCTGT TCATCGCCGACAAGGTGATGCAGCTCGACCCCACCCGCGCCACCCCGGCGGTGACCAATAACGACGGTCTGGACTACGTG CCCACCAACAAGCACGTGCTGTTCGGGCACCACTTCGCCGCGATCGCCGGCGCCGGGCCGTTGGTCGGCCCGGTGCTCGC CGCGCAGATGGGCTACCTGCCCGGCCTGCTGTGGCTGGTGGTTGGCGTGGTGCTGGCCGGCGCGGTGCAGGACTTCATGG TGCTGTTCCTGTCCACGCGCCGCAACGGCCGCTCGCTCGGCGACCTGGTGCGCGAAGAGATGGGCCAGGTGCCCGGCACC ATCGCGCTGTTCGGCGCCTTCCTGATCATGATCATCATCCTGGCGGTGCTGGCGATGGTGGTGGTCAAGGCCTTGGCCGA GAGCCCGTGGGGCATGTTCACGGTGATCGCGACGATGCCCATCGCGATCATGATGGGCGTGTACATGCGCTACATCCGCC CCGGCAAGATCGGCGAGATTTCGGTGGTGGGATTGATCCTGCTACTGGGTGCGATCTGGCTAGGTGGCCAGGTGGCCGCC GACCCGACCTGGGGCCCTGCCTTCACCTTCACCGCCAAGCAGATCACCTGGATGTTGATCGGCTACGGCTTCATCGCCTC GGTGCTGCCGGTATGGCTGCTGCTGGCACCGCGCGACTATCTGTCCACCTTCCTCAAGATCGGCACCATCCTGGGCCTGG CGATCGGCATCCTGATCGTGATGCCCGACCTCAAGATGCCGGCGCTCACCCAGTTCGCTGCCAGCGGCGATGGCCCGGTG TGGAAGGGCGGCATCTTCCCGTTCCTGTTCATCACCATCGCCTGCGGTGCGGTGTCCGGCTTCCATGCGTTGATCGCCTC CGGCACCACGCCCAAGCTGCTCGCCAACGAAGCGCACATGCGCTACATCGGCTACGGCGGCATGTTGATGGAATCGTTCG TGGCGATCATGGCGCTGGTGGCCGCGTCGATCATCGAACCCGGCATCTATTTCGCCATGAATAGCCCGGCCTCGTTGGTC GGCAGCGATACCGTCGCAGTGGCTGCCAAGGTCAGCGAATGGGGCTTTGCAATCACCCCGGAAGTGCTGGAAGCCACCGC GCGCGACATCGGCGAGCACAGCATCCTGGCGCGCGCCGGTGGTGCACCCACGCTGGCGGTAGGCATCGCGCAGATCCTGC ACCACGTGCTGCCGGGCGAGAACACGATGGCGTTCTGGTACCACTTCGCGATCCTGTTCGAAGCGTTGTTCATCCTCACC GCAGTGGACGCGGGCACGCGTGCCGGCCGCTTCATGCTGCAGGACCTGCTGGGCAACTTCATCCCGGCACTGAAGAAGAC CGAATCGTGGACCGCCAACATCATCGCCACCGCCGGTTGCGTGGCGCTGTGGGGCTACCTGCTCTACACCGGCGTGATCG ATCCGTTCGGCGGTATCCAGACGCTGTGGCCGTTGTTCGGCATCTCCAACCAGATGCTGGCCGGCATCGCGTTGATGCTG GGCACAGTGGTGCTGTTCAAGATGAAGCGTGACCGCTACGCCTGGGTCACCATCGTGCCGGCGCTGTGGCTGCTGTTGTG CACCACCTACGCCGGGCTGATCAAGATCTTCGACAGCAACCCGGCGCAGGGTTTCCTGGCGCAGGCGCACAAGTTCCAGG CCGCCATCGCCAGCAACACCATCACCGCACCGGCCAAGACCGTGCCGCAGATGCAGCAGATCGTCACCAACGCCTACGTC AACACCGGGCTGACGGTGCTGTTCCTGTTCGTGGTGGGCTCGATCCTGATCTACGCAGTCAAAACGATCGTGGTCGCCCG CCGCAGCCCGCAGCGCAGCGATCGCGAAACCCCGTACGTGGCACTGCAGCCACACCAGATGGCGGATCTGTAA
Upstream 100 bases:
>100_bases ACACCATACGACCAAAGGCTTACCCGATCCCCGGGCGGCACCATTGACCGCGGACAGCCGGCGGGAGGACCCTTAGCGGG ATCGTTCCTGAGGGGCATGC
Downstream 100 bases:
>100_bases TGGGCACTCAACTCGTTCTTGCCAGCCAATACCAGGCCCATCGCCGCATCTGGCGCCGCCTGGTGCAGACCGCACGCCTG TGCTGCGGCATCCCGGACTA
Product: carbon starvation protein A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 690; Mature: 690
Protein sequence:
>690_residues MKGISKLAWGALALLAAFCLGTVALRRGEHINALWIVVAAVSIYLIAYRFYGLFIADKVMQLDPTRATPAVTNNDGLDYV PTNKHVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGLLWLVVGVVLAGAVQDFMVLFLSTRRNGRSLGDLVREEMGQVPGT IALFGAFLIMIIILAVLAMVVVKALAESPWGMFTVIATMPIAIMMGVYMRYIRPGKIGEISVVGLILLLGAIWLGGQVAA DPTWGPAFTFTAKQITWMLIGYGFIASVLPVWLLLAPRDYLSTFLKIGTILGLAIGILIVMPDLKMPALTQFAASGDGPV WKGGIFPFLFITIACGAVSGFHALIASGTTPKLLANEAHMRYIGYGGMLMESFVAIMALVAASIIEPGIYFAMNSPASLV GSDTVAVAAKVSEWGFAITPEVLEATARDIGEHSILARAGGAPTLAVGIAQILHHVLPGENTMAFWYHFAILFEALFILT AVDAGTRAGRFMLQDLLGNFIPALKKTESWTANIIATAGCVALWGYLLYTGVIDPFGGIQTLWPLFGISNQMLAGIALML GTVVLFKMKRDRYAWVTIVPALWLLLCTTYAGLIKIFDSNPAQGFLAQAHKFQAAIASNTITAPAKTVPQMQQIVTNAYV NTGLTVLFLFVVGSILIYAVKTIVVARRSPQRSDRETPYVALQPHQMADL
Sequences:
>Translated_690_residues MKGISKLAWGALALLAAFCLGTVALRRGEHINALWIVVAAVSIYLIAYRFYGLFIADKVMQLDPTRATPAVTNNDGLDYV PTNKHVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGLLWLVVGVVLAGAVQDFMVLFLSTRRNGRSLGDLVREEMGQVPGT IALFGAFLIMIIILAVLAMVVVKALAESPWGMFTVIATMPIAIMMGVYMRYIRPGKIGEISVVGLILLLGAIWLGGQVAA DPTWGPAFTFTAKQITWMLIGYGFIASVLPVWLLLAPRDYLSTFLKIGTILGLAIGILIVMPDLKMPALTQFAASGDGPV WKGGIFPFLFITIACGAVSGFHALIASGTTPKLLANEAHMRYIGYGGMLMESFVAIMALVAASIIEPGIYFAMNSPASLV GSDTVAVAAKVSEWGFAITPEVLEATARDIGEHSILARAGGAPTLAVGIAQILHHVLPGENTMAFWYHFAILFEALFILT AVDAGTRAGRFMLQDLLGNFIPALKKTESWTANIIATAGCVALWGYLLYTGVIDPFGGIQTLWPLFGISNQMLAGIALML GTVVLFKMKRDRYAWVTIVPALWLLLCTTYAGLIKIFDSNPAQGFLAQAHKFQAAIASNTITAPAKTVPQMQQIVTNAYV NTGLTVLFLFVVGSILIYAVKTIVVARRSPQRSDRETPYVALQPHQMADL >Mature_690_residues MKGISKLAWGALALLAAFCLGTVALRRGEHINALWIVVAAVSIYLIAYRFYGLFIADKVMQLDPTRATPAVTNNDGLDYV PTNKHVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGLLWLVVGVVLAGAVQDFMVLFLSTRRNGRSLGDLVREEMGQVPGT IALFGAFLIMIIILAVLAMVVVKALAESPWGMFTVIATMPIAIMMGVYMRYIRPGKIGEISVVGLILLLGAIWLGGQVAA DPTWGPAFTFTAKQITWMLIGYGFIASVLPVWLLLAPRDYLSTFLKIGTILGLAIGILIVMPDLKMPALTQFAASGDGPV WKGGIFPFLFITIACGAVSGFHALIASGTTPKLLANEAHMRYIGYGGMLMESFVAIMALVAASIIEPGIYFAMNSPASLV GSDTVAVAAKVSEWGFAITPEVLEATARDIGEHSILARAGGAPTLAVGIAQILHHVLPGENTMAFWYHFAILFEALFILT AVDAGTRAGRFMLQDLLGNFIPALKKTESWTANIIATAGCVALWGYLLYTGVIDPFGGIQTLWPLFGISNQMLAGIALML GTVVLFKMKRDRYAWVTIVPALWLLLCTTYAGLIKIFDSNPAQGFLAQAHKFQAAIASNTITAPAKTVPQMQQIVTNAYV NTGLTVLFLFVVGSILIYAVKTIVVARRSPQRSDRETPYVALQPHQMADL
Specific function: Unknown
COG id: COG1966
COG function: function code T; Carbon starvation protein, predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CstA family [H]
Homologues:
Organism=Escherichia coli, GI87082431, Length=704, Percent_Identity=66.4772727272727, Blast_Score=949, Evalue=0.0, Organism=Escherichia coli, GI1786814, Length=684, Percent_Identity=66.6666666666667, Blast_Score=906, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003706 [H]
Pfam domain/function: PF02554 CstA [H]
EC number: NA
Molecular weight: Translated: 73976; Mature: 73976
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGISKLAWGALALLAAFCLGTVALRRGEHINALWIVVAAVSIYLIAYRFYGLFIADKVM CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLDPTRATPAVTNNDGLDYVPTNKHVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGLLWLV HCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VGVVLAGAVQDFMVLFLSTRRNGRSLGDLVREEMGQVPGTIALFGAFLIMIIILAVLAMV HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH VVKALAESPWGMFTVIATMPIAIMMGVYMRYIRPGKIGEISVVGLILLLGAIWLGGQVAA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEC DPTWGPAFTFTAKQITWMLIGYGFIASVLPVWLLLAPRDYLSTFLKIGTILGLAIGILIV CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH MPDLKMPALTQFAASGDGPVWKGGIFPFLFITIACGAVSGFHALIASGTTPKLLANEAHM CCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCE RYIGYGGMLMESFVAIMALVAASIIEPGIYFAMNSPASLVGSDTVAVAAKVSEWGFAITP EEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHEEEEHHHCCCCCCH EVLEATARDIGEHSILARAGGAPTLAVGIAQILHHVLPGENTMAFWYHFAILFEALFILT HHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AVDAGTRAGRFMLQDLLGNFIPALKKTESWTANIIATAGCVALWGYLLYTGVIDPFGGIQ HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH TLWPLFGISNQMLAGIALMLGTVVLFKMKRDRYAWVTIVPALWLLLCTTYAGLIKIFDSN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC PAQGFLAQAHKFQAAIASNTITAPAKTVPQMQQIVTNAYVNTGLTVLFLFVVGSILIYAV CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTIVVARRSPQRSDRETPYVALQPHQMADL HHHHHHCCCCCCCCCCCCEEEECCHHHCCC >Mature Secondary Structure MKGISKLAWGALALLAAFCLGTVALRRGEHINALWIVVAAVSIYLIAYRFYGLFIADKVM CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLDPTRATPAVTNNDGLDYVPTNKHVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGLLWLV HCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VGVVLAGAVQDFMVLFLSTRRNGRSLGDLVREEMGQVPGTIALFGAFLIMIIILAVLAMV HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH VVKALAESPWGMFTVIATMPIAIMMGVYMRYIRPGKIGEISVVGLILLLGAIWLGGQVAA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEC DPTWGPAFTFTAKQITWMLIGYGFIASVLPVWLLLAPRDYLSTFLKIGTILGLAIGILIV CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH MPDLKMPALTQFAASGDGPVWKGGIFPFLFITIACGAVSGFHALIASGTTPKLLANEAHM CCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCE RYIGYGGMLMESFVAIMALVAASIIEPGIYFAMNSPASLVGSDTVAVAAKVSEWGFAITP EEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHEEEEHHHCCCCCCH EVLEATARDIGEHSILARAGGAPTLAVGIAQILHHVLPGENTMAFWYHFAILFEALFILT HHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AVDAGTRAGRFMLQDLLGNFIPALKKTESWTANIIATAGCVALWGYLLYTGVIDPFGGIQ HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH TLWPLFGISNQMLAGIALMLGTVVLFKMKRDRYAWVTIVPALWLLLCTTYAGLIKIFDSN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC PAQGFLAQAHKFQAAIASNTITAPAKTVPQMQQIVTNAYVNTGLTVLFLFVVGSILIYAV CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTIVVARRSPQRSDRETPYVALQPHQMADL HHHHHHCCCCCCCCCCCCEEEECCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]