Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 66767684

GI number: 66767684

Start: 1641492

End: 1642175

Strand: Reverse

Name: yggS [C]

Synonym: XC_1357

Alternate gene names: 66767684

Gene position: 1642175-1641492 (Counterclockwise)

Preceding gene: 66767688

Following gene: 66767683

Centisome position: 31.89

GC content: 68.13

Gene sequence:

>684_bases
GTGCCCGCTTCCTCGTTGCACCAGATGCTGGCCGCCATCCAGGCGGCAGCCCCTCCCAACGCCGCGCCCGCGCGCCTGCT
GGCGGTGTCCAAGACCCAGCCGGCCGACGCCGTGGCCGGGTTAGCCGCGCAAGGCCAGCAGGCCTTCGGCGAGAACTATG
TGCAGGAAGCGGCCACCAAGATCGCGCAGCTTCAAGCGCTGCAGCTGGAGTGGCACCTGATCGGCCACCTGCAATCCAAC
AAGGCCGACATGGCCAGCCAGTGTTTCGATTGGGTGCAGACCGTGGACCGCGCCAAGCTGATCGCACTGCTCGCCCGGCA
TCGCCCGGACGGCCGCGCGCCCTTGAATGTGCTGATCCAGGTCAATATCGACGATGAGGACAGCAAGCACGGCTGCGCGC
CGGAGGCGATCGACGTCCTGGCCGCGGAGATTGCCACCCACCCCCCACTGCAGCTGCGCGGATTGATGGCGATTCCCGCG
CCGTTTCCCGAGGTCACGCGCCGGCACCAGGCATTCGCGCGCATGCAGGCCTTGTTCGCGACACTGCGCAGCCAGTATCC
GCAGGCAGATACCTTGTCGATGGGCATGAGCGCGGATTTCGCCGATGCCATTGCGGCCGGCGCCACCATGGTGCGCGTGG
GCACGGCGCTATTTGGCCAGCGCAACGCGCCACCGGCCGCCTGA

Upstream 100 bases:

>100_bases
CCGCGAGGAAGATCCGCCGCGCCCGGCGCGCACCGGCACAACTGGAAGGAAAGGCACGGGCGCGGCACTATGGCCGCCTT
GCTTACCCGTTGGCTGACCT

Downstream 100 bases:

>100_bases
CACGTCGGCCGTTTCCTTCCTCCTTCTTGATGGTGCTGCAATGACCCAGCCTTCCTCCTCCACAGCTGTGGCTGCACACG
GCGATGTTCCGGTGGTTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPASSLHQMLAAIQAAAPPNAAPARLLAVSKTQPADAVAGLAAQGQQAFGENYVQEAATKIAQLQALQLEWHLIGHLQSN
KADMASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQVNIDDEDSKHGCAPEAIDVLAAEIATHPPLQLRGLMAIPA
PFPEVTRRHQAFARMQALFATLRSQYPQADTLSMGMSADFADAIAAGATMVRVGTALFGQRNAPPAA

Sequences:

>Translated_227_residues
MPASSLHQMLAAIQAAAPPNAAPARLLAVSKTQPADAVAGLAAQGQQAFGENYVQEAATKIAQLQALQLEWHLIGHLQSN
KADMASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQVNIDDEDSKHGCAPEAIDVLAAEIATHPPLQLRGLMAIPA
PFPEVTRRHQAFARMQALFATLRSQYPQADTLSMGMSADFADAIAAGATMVRVGTALFGQRNAPPAA
>Mature_226_residues
PASSLHQMLAAIQAAAPPNAAPARLLAVSKTQPADAVAGLAAQGQQAFGENYVQEAATKIAQLQALQLEWHLIGHLQSNK
ADMASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQVNIDDEDSKHGCAPEAIDVLAAEIATHPPLQLRGLMAIPAP
FPEVTRRHQAFARMQALFATLRSQYPQADTLSMGMSADFADAIAAGATMVRVGTALFGQRNAPPAA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=215, Percent_Identity=37.2093023255814, Blast_Score=119, Evalue=3e-27,
Organism=Escherichia coli, GI1789321, Length=200, Percent_Identity=53.5, Blast_Score=207, Evalue=7e-55,
Organism=Caenorhabditis elegans, GI17533025, Length=234, Percent_Identity=35.4700854700855, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=220, Percent_Identity=36.8181818181818, Blast_Score=110, Evalue=1e-25,
Organism=Drosophila melanogaster, GI45550861, Length=233, Percent_Identity=36.9098712446352, Blast_Score=119, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24122; Mature: 23991

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASSLHQMLAAIQAAAPPNAAPARLLAVSKTQPADAVAGLAAQGQQAFGENYVQEAATK
CCHHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IAQLQALQLEWHLIGHLQSNKADMASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQ
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
VNIDDEDSKHGCAPEAIDVLAAEIATHPPLQLRGLMAIPAPFPEVTRRHQAFARMQALFA
EEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCCCHHHHHHHHHHHHHHHHHH
TLRSQYPQADTLSMGMSADFADAIAAGATMVRVGTALFGQRNAPPAA
HHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PASSLHQMLAAIQAAAPPNAAPARLLAVSKTQPADAVAGLAAQGQQAFGENYVQEAATK
CHHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IAQLQALQLEWHLIGHLQSNKADMASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQ
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
VNIDDEDSKHGCAPEAIDVLAAEIATHPPLQLRGLMAIPAPFPEVTRRHQAFARMQALFA
EEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCCCHHHHHHHHHHHHHHHHHH
TLRSQYPQADTLSMGMSADFADAIAAGATMVRVGTALFGQRNAPPAA
HHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]