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The map label for this gene is ybiX [C]

Identifier: 66767667

GI number: 66767667

Start: 1625841

End: 1626527

Strand: Reverse

Name: ybiX [C]

Synonym: XC_1340

Alternate gene names: 66767667

Gene position: 1626527-1625841 (Counterclockwise)

Preceding gene: 66767668

Following gene: 66767666

Centisome position: 31.59

GC content: 65.21

Gene sequence:

>687_bases
ATGTTGTTGCCCATTCCCGACGTCCTGACGCCCGCCCAGCTGAGCCAGCTGAGTGAGCGTTTGGACGCGGCCGACTGGGC
CGATGGCCGCATCACCGCCGGCCATCAGTCCGCGCAGGCCAAGGACAACGCGCAGTTGCCCGAAGACAGCCCGATCGCGC
GCGAGGCCAGTGCGCTGGTGCTCGACGCGCTGTCGCGCAGCAGTACGTTTTTTTCCGCCGCGTTGCCGCGCCGGATCTAT
CCACCGCTGTTCAATCGCTACAGCGGCGGGCAGTCGTTCGGCTACCACGTCGACAATGCGGTGCGTTACGACCGCAGCCG
TGGCGGCGCCGATCCGGTGCGCACCGACGTCTCCGCCACGCTGTTCCTCAGCGACCCGGACAGCTACGACGGCGGCGAGC
TGGTGATCGAAGACACCTACGGCACGCAGTCGGTGAAATTGCCGGCCGGCCATCTGGTGATCTACCCCGGCACCAGCCTG
CATAAAGTGATGCCGGTGACGCGTGGCACGCGTGTCGCCTCGTTCTTCTGGATACAAAGCATGCTGCGCAACGATGCACA
GCGCCGCCTGCTGTTCGAATTGGACGTGTCGATCCGTCGTTTGACCCAGGACACGCCCGGGCATCCGTCGCTGATCCAGC
TCACCGGCGTGTATCACAACCTGCTGCGGCAATGGGCCGATGTCTGA

Upstream 100 bases:

>100_bases
GTTGCCGGGTGATGGCCGCTCGGCGGTATTGAACGCGACCTTCAGCTTCTGATTCATCAACGCGCCGTCCGCAGTCCGCG
GACGGCGTGGAGACCACTGC

Downstream 100 bases:

>100_bases
GCCGGTGCTGGACACCGCGCAGGTGATCGCCGCACTGCGCACGCAGCCCGCGCAGGCGGTGGCGTTGCTACGCAAGGCGG
CCGATCGCCAGGATGTGGCC

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MLLPIPDVLTPAQLSQLSERLDAADWADGRITAGHQSAQAKDNAQLPEDSPIAREASALVLDALSRSSTFFSAALPRRIY
PPLFNRYSGGQSFGYHVDNAVRYDRSRGGADPVRTDVSATLFLSDPDSYDGGELVIEDTYGTQSVKLPAGHLVIYPGTSL
HKVMPVTRGTRVASFFWIQSMLRNDAQRRLLFELDVSIRRLTQDTPGHPSLIQLTGVYHNLLRQWADV

Sequences:

>Translated_228_residues
MLLPIPDVLTPAQLSQLSERLDAADWADGRITAGHQSAQAKDNAQLPEDSPIAREASALVLDALSRSSTFFSAALPRRIY
PPLFNRYSGGQSFGYHVDNAVRYDRSRGGADPVRTDVSATLFLSDPDSYDGGELVIEDTYGTQSVKLPAGHLVIYPGTSL
HKVMPVTRGTRVASFFWIQSMLRNDAQRRLLFELDVSIRRLTQDTPGHPSLIQLTGVYHNLLRQWADV
>Mature_228_residues
MLLPIPDVLTPAQLSQLSERLDAADWADGRITAGHQSAQAKDNAQLPEDSPIAREASALVLDALSRSSTFFSAALPRRIY
PPLFNRYSGGQSFGYHVDNAVRYDRSRGGADPVRTDVSATLFLSDPDSYDGGELVIEDTYGTQSVKLPAGHLVIYPGTSL
HKVMPVTRGTRVASFFWIQSMLRNDAQRRLLFELDVSIRRLTQDTPGHPSLIQLTGVYHNLLRQWADV

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=228, Percent_Identity=50.8771929824561, Blast_Score=242, Evalue=1e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1340_XANC8 (Q4UX14)

Other databases:

- EMBL:   CP000050
- RefSeq:   YP_242429.1
- ProteinModelPortal:   Q4UX14
- SMR:   Q4UX14
- STRING:   Q4UX14
- GeneID:   3381799
- GenomeReviews:   CP000050_GR
- KEGG:   xcb:XC_1340
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   ADWADGK
- PhylomeDB:   Q4UX14
- ProtClustDB:   PRK05467
- BioCyc:   XCAM314565:XC_1340-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25207; Mature: 25207

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 171-171

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLPIPDVLTPAQLSQLSERLDAADWADGRITAGHQSAQAKDNAQLPEDSPIAREASALV
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
LDALSRSSTFFSAALPRRIYPPLFNRYSGGQSFGYHVDNAVRYDRSRGGADPVRTDVSAT
HHHHHCCCHHHHHHCCCCCCCHHHHHCCCCCCCCEECCHHHHHHCCCCCCCCCCCCCEEE
LFLSDPDSYDGGELVIEDTYGTQSVKLPAGHLVIYPGTSLHKVMPVTRGTRVASFFWIQS
EEEECCCCCCCCEEEEEECCCCCEEECCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHH
MLRNDAQRRLLFELDVSIRRLTQDTPGHPSLIQLTGVYHNLLRQWADV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLPIPDVLTPAQLSQLSERLDAADWADGRITAGHQSAQAKDNAQLPEDSPIAREASALV
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
LDALSRSSTFFSAALPRRIYPPLFNRYSGGQSFGYHVDNAVRYDRSRGGADPVRTDVSAT
HHHHHCCCHHHHHHCCCCCCCHHHHHCCCCCCCCEECCHHHHHHCCCCCCCCCCCCCEEE
LFLSDPDSYDGGELVIEDTYGTQSVKLPAGHLVIYPGTSLHKVMPVTRGTRVASFFWIQS
EEEECCCCCCCCEEEEEECCCCCEEECCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHH
MLRNDAQRRLLFELDVSIRRLTQDTPGHPSLIQLTGVYHNLLRQWADV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA