| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is btuB [H]
Identifier: 66767568
GI number: 66767568
Start: 1518403
End: 1521189
Strand: Reverse
Name: btuB [H]
Synonym: XC_1241
Alternate gene names: 66767568
Gene position: 1521189-1518403 (Counterclockwise)
Preceding gene: 66767569
Following gene: 66767566
Centisome position: 29.55
GC content: 59.49
Gene sequence:
>2787_bases TTGGAGAGAGAGCTAATGAATTGCAAGTCCAACAAGCTGCGCGATGCAGTTGTCCTCGCGCTTGTCGTGGGCGTCGGCGG TACTGGTACCGCCATCGCTCAGGAAGCCGGTACCACCAACCTCGACAAGATCGAAGTCACCGGCTCGCGCATCAAGAGCG CAGACATTGAAACGTCGCAGCCCGTGCTGACGCTGACCCGTCAGGACATTGACAAGCAGGGTGTCACCTCTGTCGCGGAT GTTTTGCAGCGTGTAGCGGCCAATGGCGCGGCTCTGAACCGTACGTTCAACAATGGTGGCGACGGCAGCTCGGGCATCGC GCTTCGTAACCTTGGCAGCGCACGCACCCTGGTGCTCGTCAATGGACGTCGCTGGACCACCGGCCTGGACGGCAGCGTCG ACCTCAACACCATCCCGACCGCCATGGTCGAGCGCATCGACATCCTGAAGGATGGCGCCTCGACGATCTACGGCTCGGAT GCGATCGCCGGCGTGGTGAATATCATCACCCGCAAGAACTTCGACGGCGCCGAAGCTGGCGTCAACGTTGGCCAGTACAG CGACGGTGATGGTCAGCGTCAGGCGTACGACTTTACGTTGGGCACAACCACCGATCGTGCGACTTTGATGGTTGGCGCTT CCTACGTGAAGGAAGATTCGGTGATGGCTGGCGATCGCGAGATTTCCGCCGGCGGCCCCCCGTTCTTCAGCGGCCAGAGC GGAACGGGTTTTCCCGGCTCGTATGTCCGCAATGGTTCGCGTCGTATCCTCATCAATGGTGTTGAAACGCCGTACGTTGC TAACGTGCACGGCTATAACACCGCACCGGACAACTACCTGCTGACTCCGCAGGAGCGCACCTCGCTGTTCACCCAGGGTA GCTTCAACTTCACGGACAACGTGACGTTCCGCACCGAGGCGATGTACAACGAGCGCAAGTCCGAGCAGCTGCTGGCCGCA ATGCCGGTTACTGGCCTGACTCTCAGCGCAGATAGCCTCTACAACCCGTTTGATCAGAACCTGACCAGCGTCAACCGTCG CTTCATCGAAACCGGTGGCCGCTCGTTCAATCAGAACGTCAAGAACTGGCATTTCTACGGTGGCCTGGAAGGCTTCTTTG AATTTGCTGATCGCAGCTTCGATTGGGACGTGGGCTATCGCTACGACAAGTCCGACGAGAATGTTCTGACCTATGGTCTG TTCAACCTCGCCAACCTCAACAACGCTTATGGCCCTTCAGAACTGCGCAATGGTGTTCCGGTCTGCGTTTCGGGCCCGGG CGGCGACGTGATTCCGGGCTGCGTGCCCGTCAATCCGCTTGGACCGCGTGGCTCGATCACTCAGGACGCACTGGACTACA CGAGCTTCACCGCGCATGACTCGTCCATGGTCGAGTCCAAGGGTTACACCGCCAACATCAGCGGCGAGCTCTTCACTCTG CCGGCCGGTCCCCTGGGTTTTGCAGCAGGCTATGAATACCGCAAGGAAAGCGGCCAGTTCGACCCCGACGCATTCATCGC AGCGGGCTTGAGCACAGGTAACGGCGCACGTCCTACCGCGGGCTCCTACAGCCTGGACGAGTTCTATCTCGAACTGTCGG TTCCGGTGCTGGCCGATCTGCCCGGCGCTCAGTTGCTCGACTTCAGCCTGGCGACCCGCTATTCCGATTACAGCAACTTC GGCGATACCGTGAACAACAAGTTCGGCTTCCGTTGGAAGCCTATCCAGGACTTGATGATCCGCGGTAACTACAGCGAAGG TTTCCGCGCTCCGAGCATCAACAATCTGTTCGCAGGCAACTCCGATTCGTTCGAAACCTATGCCGATCCATGCTCGAGCC AGTCCGGCCAGCTGAGCAACCCGGTCGTGGCGCAGAATTGTGCGGCAGCAGGCGTTCCTGCGAACTTTGTGCAGCCCGGT GCTGGCAACGGCGCCAAGCAGACACTCGAGCCCTTCACCTGGACGTCCAACGACCAGTTGCAGCCAGAAACGTCGACCAG CCGTACGCTGGGCATGGTCTTCAGCCCGAGCTTTGCGCAGGGCCTGAATGTCAGCCTGGATTGGTGGCAGATCGAGATCG AAAACGCCATCACGCGTCCGGAATCGCAGTTCATCCTGGACAAGTGCTACGGCGGCAGCGCAGGTGAGCAGGCCGAGTAC TGCGCGCTTGTAACGCGTGATCCGAATTATGCGGATGGCGCTTACACCGTTACGAACATCAACATGCCGCTGCTGAATCT GGCTTCCTACAAGGTGGAAGGCTGGGATCTTGCCGTGAACTACCGCCTGCCGGAAACGGCGATCGGCCAGTTCACGATCA GCTGGGATTCGACCTATCTGTCCAGCTGGGAAACCAAGGCAACTGCGGATTCCGAGCTTGAGCAGTTCCAGGGCCGCTAT TTGAATCAGGACCCTTACTGGCGCATCCGCTCCAATCTGTATGTCGACTGGTCGCTTGGCGACTTCGGCATCAACTGGGG CCTGCGCTATAAGTCCGGCATGGCAGAAGCTTGCCCGTTGTCGACGGCACTGGCGCAAGCATATTGCTCCGATCCTGACC GCGTCACGGCTGATGGCGCTGAGCCGCGCAATCACATCGGTGCCACGACGTACCACGACATCCAGGTTCGTTACAGCACT CCCTGGAATGCCACGGTTTCGGTTGGTCTGAACAATGCCTTCGACAAGGGTCCGCCCGTCGCTTACAGCACTTCGGCAAA CCGCTTCGATCCGCAGTACGACGTCCCGGGCCGCTACATGTACATGCAGTACCGTCAGCGCTTCTGA
Upstream 100 bases:
>100_bases CTGACGCAACGCATATACCATCGGTTCACCCTGACGTTTTGGATCCGCTTCTTCGGATCCCCCGCCGGGCCAACAAACCC TTGGCAGTACCCAAGATCAC
Downstream 100 bases:
>100_bases TAGTTCGAAGCTTCGGTAAGAAAAACTACGGCCCCATTTGGGGCCGTAGTTCTATCTGCTCGTATCGTTGATCGATGCCA CCAGATGCGTTGAATCACCC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 928; Mature: 928
Protein sequence:
>928_residues MERELMNCKSNKLRDAVVLALVVGVGGTGTAIAQEAGTTNLDKIEVTGSRIKSADIETSQPVLTLTRQDIDKQGVTSVAD VLQRVAANGAALNRTFNNGGDGSSGIALRNLGSARTLVLVNGRRWTTGLDGSVDLNTIPTAMVERIDILKDGASTIYGSD AIAGVVNIITRKNFDGAEAGVNVGQYSDGDGQRQAYDFTLGTTTDRATLMVGASYVKEDSVMAGDREISAGGPPFFSGQS GTGFPGSYVRNGSRRILINGVETPYVANVHGYNTAPDNYLLTPQERTSLFTQGSFNFTDNVTFRTEAMYNERKSEQLLAA MPVTGLTLSADSLYNPFDQNLTSVNRRFIETGGRSFNQNVKNWHFYGGLEGFFEFADRSFDWDVGYRYDKSDENVLTYGL FNLANLNNAYGPSELRNGVPVCVSGPGGDVIPGCVPVNPLGPRGSITQDALDYTSFTAHDSSMVESKGYTANISGELFTL PAGPLGFAAGYEYRKESGQFDPDAFIAAGLSTGNGARPTAGSYSLDEFYLELSVPVLADLPGAQLLDFSLATRYSDYSNF GDTVNNKFGFRWKPIQDLMIRGNYSEGFRAPSINNLFAGNSDSFETYADPCSSQSGQLSNPVVAQNCAAAGVPANFVQPG AGNGAKQTLEPFTWTSNDQLQPETSTSRTLGMVFSPSFAQGLNVSLDWWQIEIENAITRPESQFILDKCYGGSAGEQAEY CALVTRDPNYADGAYTVTNINMPLLNLASYKVEGWDLAVNYRLPETAIGQFTISWDSTYLSSWETKATADSELEQFQGRY LNQDPYWRIRSNLYVDWSLGDFGINWGLRYKSGMAEACPLSTALAQAYCSDPDRVTADGAEPRNHIGATTYHDIQVRYST PWNATVSVGLNNAFDKGPPVAYSTSANRFDPQYDVPGRYMYMQYRQRF
Sequences:
>Translated_928_residues MERELMNCKSNKLRDAVVLALVVGVGGTGTAIAQEAGTTNLDKIEVTGSRIKSADIETSQPVLTLTRQDIDKQGVTSVAD VLQRVAANGAALNRTFNNGGDGSSGIALRNLGSARTLVLVNGRRWTTGLDGSVDLNTIPTAMVERIDILKDGASTIYGSD AIAGVVNIITRKNFDGAEAGVNVGQYSDGDGQRQAYDFTLGTTTDRATLMVGASYVKEDSVMAGDREISAGGPPFFSGQS GTGFPGSYVRNGSRRILINGVETPYVANVHGYNTAPDNYLLTPQERTSLFTQGSFNFTDNVTFRTEAMYNERKSEQLLAA MPVTGLTLSADSLYNPFDQNLTSVNRRFIETGGRSFNQNVKNWHFYGGLEGFFEFADRSFDWDVGYRYDKSDENVLTYGL FNLANLNNAYGPSELRNGVPVCVSGPGGDVIPGCVPVNPLGPRGSITQDALDYTSFTAHDSSMVESKGYTANISGELFTL PAGPLGFAAGYEYRKESGQFDPDAFIAAGLSTGNGARPTAGSYSLDEFYLELSVPVLADLPGAQLLDFSLATRYSDYSNF GDTVNNKFGFRWKPIQDLMIRGNYSEGFRAPSINNLFAGNSDSFETYADPCSSQSGQLSNPVVAQNCAAAGVPANFVQPG AGNGAKQTLEPFTWTSNDQLQPETSTSRTLGMVFSPSFAQGLNVSLDWWQIEIENAITRPESQFILDKCYGGSAGEQAEY CALVTRDPNYADGAYTVTNINMPLLNLASYKVEGWDLAVNYRLPETAIGQFTISWDSTYLSSWETKATADSELEQFQGRY LNQDPYWRIRSNLYVDWSLGDFGINWGLRYKSGMAEACPLSTALAQAYCSDPDRVTADGAEPRNHIGATTYHDIQVRYST PWNATVSVGLNNAFDKGPPVAYSTSANRFDPQYDVPGRYMYMQYRQRF >Mature_928_residues MERELMNCKSNKLRDAVVLALVVGVGGTGTAIAQEAGTTNLDKIEVTGSRIKSADIETSQPVLTLTRQDIDKQGVTSVAD VLQRVAANGAALNRTFNNGGDGSSGIALRNLGSARTLVLVNGRRWTTGLDGSVDLNTIPTAMVERIDILKDGASTIYGSD AIAGVVNIITRKNFDGAEAGVNVGQYSDGDGQRQAYDFTLGTTTDRATLMVGASYVKEDSVMAGDREISAGGPPFFSGQS GTGFPGSYVRNGSRRILINGVETPYVANVHGYNTAPDNYLLTPQERTSLFTQGSFNFTDNVTFRTEAMYNERKSEQLLAA MPVTGLTLSADSLYNPFDQNLTSVNRRFIETGGRSFNQNVKNWHFYGGLEGFFEFADRSFDWDVGYRYDKSDENVLTYGL FNLANLNNAYGPSELRNGVPVCVSGPGGDVIPGCVPVNPLGPRGSITQDALDYTSFTAHDSSMVESKGYTANISGELFTL PAGPLGFAAGYEYRKESGQFDPDAFIAAGLSTGNGARPTAGSYSLDEFYLELSVPVLADLPGAQLLDFSLATRYSDYSNF GDTVNNKFGFRWKPIQDLMIRGNYSEGFRAPSINNLFAGNSDSFETYADPCSSQSGQLSNPVVAQNCAAAGVPANFVQPG AGNGAKQTLEPFTWTSNDQLQPETSTSRTLGMVFSPSFAQGLNVSLDWWQIEIENAITRPESQFILDKCYGGSAGEQAEY CALVTRDPNYADGAYTVTNINMPLLNLASYKVEGWDLAVNYRLPETAIGQFTISWDSTYLSSWETKATADSELEQFQGRY LNQDPYWRIRSNLYVDWSLGDFGINWGLRYKSGMAEACPLSTALAQAYCSDPDRVTADGAEPRNHIGATTYHDIQVRYST PWNATVSVGLNNAFDKGPPVAYSTSANRFDPQYDVPGRYMYMQYRQRF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=186, Percent_Identity=37.0967741935484, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1788478, Length=131, Percent_Identity=35.8778625954198, Blast_Score=80, Evalue=6e-16,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 100925; Mature: 100925
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERELMNCKSNKLRDAVVLALVVGVGGTGTAIAQEAGTTNLDKIEVTGSRIKSADIETSQ CCCHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEECCCEEECCCCCCCC PVLTLTRQDIDKQGVTSVADVLQRVAANGAALNRTFNNGGDGSSGIALRNLGSARTLVLV CEEEEEHHHCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEECCCCEEEEEE NGRRWTTGLDGSVDLNTIPTAMVERIDILKDGASTIYGSDAIAGVVNIITRKNFDGAEAG CCCEEECCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCHHHC VNVGQYSDGDGQRQAYDFTLGTTTDRATLMVGASYVKEDSVMAGDREISAGGPPFFSGQS CCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEHHHHCCCCEECCCCEECCCCCCCCCCCC GTGFPGSYVRNGSRRILINGVETPYVANVHGYNTAPDNYLLTPQERTSLFTQGSFNFTDN CCCCCHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCEEECCHHHHHEEECCCCCCCCC VTFRTEAMYNERKSEQLLAAMPVTGLTLSADSLYNPFDQNLTSVNRRFIETGGRSFNQNV EEEEEHHHHHHHHHHHEEEECCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC KNWHFYGGLEGFFEFADRSFDWDVGYRYDKSDENVLTYGLFNLANLNNAYGPSELRNGVP CCEEEECCHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEEEHHCCCCCCCHHHHHCCCC VCVSGPGGDVIPGCVPVNPLGPRGSITQDALDYTSFTAHDSSMVESKGYTANISGELFTL EEEECCCCCCCCCCEECCCCCCCCCCCHHHHHHCEECCCCCHHHHCCCCEEECCCEEEEC PAGPLGFAAGYEYRKESGQFDPDAFIAAGLSTGNGARPTAGSYSLDEFYLELSVPVLADL CCCCCCHHCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEECC PGAQLLDFSLATRYSDYSNFGDTVNNKFGFRWKPIQDLMIRGNYSEGFRAPSINNLFAGN CCCCEEEHHHHHHCCCHHHCCCCCCCCCCCEECCHHHEEEECCCCCCCCCCCCCCEECCC SDSFETYADPCSSQSGQLSNPVVAQNCAAAGVPANFVQPGAGNGAKQTLEPFTWTSNDQL CCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHCCCCCCCCCHHCCCCCEECCCCCC QPETSTSRTLGMVFSPSFAQGLNVSLDWWQIEIENAITRPESQFILDKCYGGSAGEQAEY CCCCCCCCEEEEEECCCHHCCCCCEEEEEEEEECHHHCCCCHHHHHHHHCCCCCCCCCEE CALVTRDPNYADGAYTVTNINMPLLNLASYKVEGWDLAVNYRLPETAIGQFTISWDSTYL EEEEECCCCCCCCEEEEEECCCCEEEHEEEEECCEEEEEEEECCCCCCCEEEEEECCHHH SSWETKATADSELEQFQGRYLNQDPYWRIRSNLYVDWSLGDFGINWGLRYKSGMAEACPL CCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCH STALAQAYCSDPDRVTADGAEPRNHIGATTYHDIQVRYSTPWNATVSVGLNNAFDKGPPV HHHHHHHHHCCCCCEECCCCCCHHCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCE AYSTSANRFDPQYDVPGRYMYMQYRQRF EEECCCCCCCCCCCCCCCEEEHHHHHCC >Mature Secondary Structure MERELMNCKSNKLRDAVVLALVVGVGGTGTAIAQEAGTTNLDKIEVTGSRIKSADIETSQ CCCHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEECCCEEECCCCCCCC PVLTLTRQDIDKQGVTSVADVLQRVAANGAALNRTFNNGGDGSSGIALRNLGSARTLVLV CEEEEEHHHCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEECCCCEEEEEE NGRRWTTGLDGSVDLNTIPTAMVERIDILKDGASTIYGSDAIAGVVNIITRKNFDGAEAG CCCEEECCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCHHHC VNVGQYSDGDGQRQAYDFTLGTTTDRATLMVGASYVKEDSVMAGDREISAGGPPFFSGQS CCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEHHHHCCCCEECCCCEECCCCCCCCCCCC GTGFPGSYVRNGSRRILINGVETPYVANVHGYNTAPDNYLLTPQERTSLFTQGSFNFTDN CCCCCHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCEEECCHHHHHEEECCCCCCCCC VTFRTEAMYNERKSEQLLAAMPVTGLTLSADSLYNPFDQNLTSVNRRFIETGGRSFNQNV EEEEEHHHHHHHHHHHEEEECCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC KNWHFYGGLEGFFEFADRSFDWDVGYRYDKSDENVLTYGLFNLANLNNAYGPSELRNGVP CCEEEECCHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEEEHHCCCCCCCHHHHHCCCC VCVSGPGGDVIPGCVPVNPLGPRGSITQDALDYTSFTAHDSSMVESKGYTANISGELFTL EEEECCCCCCCCCCEECCCCCCCCCCCHHHHHHCEECCCCCHHHHCCCCEEECCCEEEEC PAGPLGFAAGYEYRKESGQFDPDAFIAAGLSTGNGARPTAGSYSLDEFYLELSVPVLADL CCCCCCHHCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEECC PGAQLLDFSLATRYSDYSNFGDTVNNKFGFRWKPIQDLMIRGNYSEGFRAPSINNLFAGN CCCCEEEHHHHHHCCCHHHCCCCCCCCCCCEECCHHHEEEECCCCCCCCCCCCCCEECCC SDSFETYADPCSSQSGQLSNPVVAQNCAAAGVPANFVQPGAGNGAKQTLEPFTWTSNDQL CCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHCCCCCCCCCHHCCCCCEECCCCCC QPETSTSRTLGMVFSPSFAQGLNVSLDWWQIEIENAITRPESQFILDKCYGGSAGEQAEY CCCCCCCCEEEEEECCCHHCCCCCEEEEEEEEECHHHCCCCHHHHHHHHCCCCCCCCCEE CALVTRDPNYADGAYTVTNINMPLLNLASYKVEGWDLAVNYRLPETAIGQFTISWDSTYL EEEEECCCCCCCCEEEEEECCCCEEEHEEEEECCEEEEEEEECCCCCCCEEEEEECCHHH SSWETKATADSELEQFQGRYLNQDPYWRIRSNLYVDWSLGDFGINWGLRYKSGMAEACPL CCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCH STALAQAYCSDPDRVTADGAEPRNHIGATTYHDIQVRYSTPWNATVSVGLNNAFDKGPPV HHHHHHHHHCCCCCEECCCCCCHHCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCE AYSTSANRFDPQYDVPGRYMYMQYRQRF EEECCCCCCCCCCCCCCCEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]