Click here to switch to the map view.

The map label for this gene is ynfL [H]

Identifier: 66767354

GI number: 66767354

Start: 1235842

End: 1236726

Strand: Reverse

Name: ynfL [H]

Synonym: XC_1022

Alternate gene names: 66767354

Gene position: 1236726-1235842 (Counterclockwise)

Preceding gene: 66767355

Following gene: 66767352

Centisome position: 24.02

GC content: 51.86

Gene sequence:

>885_bases
ATGGAGCTGCGACATCTGCGCTGCTTTGTGGTTTTGGCCGAGGAACTGCACTTCACAAGAGCAGCTGAACGCCTCCATAT
CGAACAATCTCCTTTATCCAGGACTATCAAGGAACTGGAAGACGACTTGGGCGCTTTACTGTTCAACCGTGATCGAAGAG
GAACGCGGCTGACCGATGCCGGCAAAGCATTTCTTCTGGACGTACGCCGTTTATTTACCACTTTGGATCAAGCCCGAGAA
AATGTGAAGGCGGTTTCCGCGGGCTTCCGGGTAAGTATGCGGATTGCAGTATCAGACGGAGCGATCGATTCCAGATTATC
TGATCTTCTTGCACGTTGTCGCGAGGAGGAGCCTGATGTTGAAATTCGCCTCACAGAAGTCACGCTCTCTGAGCTCCTCC
ATGGACTAAGGTCGGGAGACTTCACCATTGGGTTCACACACACAGAAGAGGTTGGCGATGGCATTGTTGCTGAACCCATT
TGGCATGCACGAATGGTTGCAGTGATACCAGCCCGTCATCCGCTACTCGCTTTCAAAGAAGTGCCTATCGAAGAACTTCT
CCGCGCCCCATTGATCATGTGGAACCACCAAGCCTATGAGGGCTACGATAAGGCCTTTACCAAGCTGTTGCGAGGCTTGG
ATGAGAAACCAAACGTCATCGAGCGCGCAGCTTCGCTCGACGTTATGCTAGCTCTCGTTGCGGCTGGTTACGGGATTGGC
CTCGCATCTGGCGCGAAGCTGGAACCGTGCAAGCATTCTGATATCGTCATCCGTCCATTGGCAAATCAATCAGCGGTGAT
TACGACGTACATGCTGACAGCTGCCAATGCTGCGCCTTCAATCTCTGTGGATCGCTTCACAACACGTTTGAAAGATAGAA
ATTAG

Upstream 100 bases:

>100_bases
AATTCATCGCTAAGCTACGCGATTATAGGAGCCAGCAACCGAACCAGCCTTGCCCTCTGCTGTTGGCACAGATGATTGTG
ACTGTTAAGGAGTCTTGCGG

Downstream 100 bases:

>100_bases
ATAATCGCTGCAATCAAATCGAACACTTCACCCTTCTGAGTCAGAGTAAAGAATGCTTTCAGTAGCAGTCATCAGGTTGG
CTGCACTGTCGTTTAATGCG

Product: regulatory protein bphR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MELRHLRCFVVLAEELHFTRAAERLHIEQSPLSRTIKELEDDLGALLFNRDRRGTRLTDAGKAFLLDVRRLFTTLDQARE
NVKAVSAGFRVSMRIAVSDGAIDSRLSDLLARCREEEPDVEIRLTEVTLSELLHGLRSGDFTIGFTHTEEVGDGIVAEPI
WHARMVAVIPARHPLLAFKEVPIEELLRAPLIMWNHQAYEGYDKAFTKLLRGLDEKPNVIERAASLDVMLALVAAGYGIG
LASGAKLEPCKHSDIVIRPLANQSAVITTYMLTAANAAPSISVDRFTTRLKDRN

Sequences:

>Translated_294_residues
MELRHLRCFVVLAEELHFTRAAERLHIEQSPLSRTIKELEDDLGALLFNRDRRGTRLTDAGKAFLLDVRRLFTTLDQARE
NVKAVSAGFRVSMRIAVSDGAIDSRLSDLLARCREEEPDVEIRLTEVTLSELLHGLRSGDFTIGFTHTEEVGDGIVAEPI
WHARMVAVIPARHPLLAFKEVPIEELLRAPLIMWNHQAYEGYDKAFTKLLRGLDEKPNVIERAASLDVMLALVAAGYGIG
LASGAKLEPCKHSDIVIRPLANQSAVITTYMLTAANAAPSISVDRFTTRLKDRN
>Mature_294_residues
MELRHLRCFVVLAEELHFTRAAERLHIEQSPLSRTIKELEDDLGALLFNRDRRGTRLTDAGKAFLLDVRRLFTTLDQARE
NVKAVSAGFRVSMRIAVSDGAIDSRLSDLLARCREEEPDVEIRLTEVTLSELLHGLRSGDFTIGFTHTEEVGDGIVAEPI
WHARMVAVIPARHPLLAFKEVPIEELLRAPLIMWNHQAYEGYDKAFTKLLRGLDEKPNVIERAASLDVMLALVAAGYGIG
LASGAKLEPCKHSDIVIRPLANQSAVITTYMLTAANAAPSISVDRFTTRLKDRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=30.5841924398625, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788887, Length=272, Percent_Identity=29.4117647058824, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI2367136, Length=263, Percent_Identity=28.5171102661597, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790208, Length=252, Percent_Identity=29.7619047619048, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI145693105, Length=285, Percent_Identity=26.3157894736842, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI157672245, Length=232, Percent_Identity=28.448275862069, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787530, Length=263, Percent_Identity=25.8555133079848, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=261, Percent_Identity=27.2030651340996, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=281, Percent_Identity=26.6903914590747, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787601, Length=236, Percent_Identity=25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788296, Length=239, Percent_Identity=30.1255230125523, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787806, Length=274, Percent_Identity=25.9124087591241, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788748, Length=262, Percent_Identity=25.9541984732824, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789173, Length=245, Percent_Identity=29.3877551020408, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786713, Length=186, Percent_Identity=28.494623655914, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788297, Length=158, Percent_Identity=32.2784810126582, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32801; Mature: 32801

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRHLRCFVVLAEELHFTRAAERLHIEQSPLSRTIKELEDDLGALLFNRDRRGTRLTDA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GKAFLLDVRRLFTTLDQARENVKAVSAGFRVSMRIAVSDGAIDSRLSDLLARCREEEPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCC
EIRLTEVTLSELLHGLRSGDFTIGFTHTEEVGDGIVAEPIWHARMVAVIPARHPLLAFKE
EEEEHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCHHHHHHEEEECCCCCHHHHHC
VPIEELLRAPLIMWNHQAYEGYDKAFTKLLRGLDEKPNVIERAASLDVMLALVAAGYGIG
CCHHHHHCCCCEEECCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
LASGAKLEPCKHSDIVIRPLANQSAVITTYMLTAANAAPSISVDRFTTRLKDRN
CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MELRHLRCFVVLAEELHFTRAAERLHIEQSPLSRTIKELEDDLGALLFNRDRRGTRLTDA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GKAFLLDVRRLFTTLDQARENVKAVSAGFRVSMRIAVSDGAIDSRLSDLLARCREEEPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCC
EIRLTEVTLSELLHGLRSGDFTIGFTHTEEVGDGIVAEPIWHARMVAVIPARHPLLAFKE
EEEEHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCHHHHHHEEEECCCCCHHHHHC
VPIEELLRAPLIMWNHQAYEGYDKAFTKLLRGLDEKPNVIERAASLDVMLALVAAGYGIG
CCHHHHHCCCCEEECCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
LASGAKLEPCKHSDIVIRPLANQSAVITTYMLTAANAAPSISVDRFTTRLKDRN
CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]