Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 66766591

GI number: 66766591

Start: 295956

End: 296912

Strand: Reverse

Name: rbcR [H]

Synonym: XC_0246

Alternate gene names: 66766591

Gene position: 296912-295956 (Counterclockwise)

Preceding gene: 66766596

Following gene: 66766590

Centisome position: 5.77

GC content: 64.99

Gene sequence:

>957_bases
ATGGCGCCAACCCCTCGGTTTTCCTACAAATCCGACCGCCTCAAGCCGCTGCGCGCGTTCTGCCAGACGGTGCGACTGGG
CTCTGTCTCACGCGCCGCTGAGGCACTATATGTGAGCCAGCCGGCGGTGACCCTGCAGTTGCAGGCGCTGGAGCGTGACC
TGGGGGTGGCGCTGTTCGAACGCTCCGGCCGGCGGTTGGCGCCCAGCCGCGAGGGCCAGCTGCTGTACGACATGGCGCTG
CCGCTGGTGGAAAGCCTGGACGGCCTGGAGGCCGCCTTCCGCGAGAAAGTGCGCGGGCTGGACGCCGGCGAGCTCAATAT
CGCCGCCAACAGCTCCACCATCCTGTACCTGCTGCCGCGCATCGTGGCCAACTTCCGCGCGCGCCATCCGGACGTGCGCC
TGACACTGCACAACGCCATCAGCGCCGATGGCACCGATCTGCTGCGCGAGGATGCGGTGGACCTGGCAGTCGGCTCGATG
CTGGACGTGCCGGCCGACCTCAACTACGCGCCGGTATATCGCTTCGAACAGTTATTGATCACCCCGCCCGATCACCCGCT
GGCAAGCAAGCCGATAGTTACGCTGCAGAATCTGTCGCCGTATCCGCTGATCCTGCCGCCGCGTAGGCAAGTGACCTATC
GGCTGGTCGATCTGATCTTCCAACAGGCACGCGTGCCCTACACCGTGGCCTTGGAAGTGGGCGGTTGGGAGGTGATCAAG
CAATACGTGGCGATGGGCATGGGCATTTCCATCGTCACCGCGATCTGCGTCACCGACGCCGACCGCGACAAACTCGCCAC
ACGCTCGCTCAAGGATTATTTCCCCACCCGCAGCTACGGCGTGGTGGTGCGCAAGGGCAAATACCTCTCGCCGCAGGCAC
GCGCCTTTATCGAACTGATCCAGCCGGACCTGTTCACCCCGCGCGGCTACGACGAGAGTGGTCACTCCGAGCGCTGA

Upstream 100 bases:

>100_bases
CCGGAGCTCCAACCTGCGCCTCGGCAATCTATTTGACAAAGCAGTTTTATCAATGCTGTAAATAAGCCTGACTTATAGTT
AGGCGCAAACCCCTAAAGCC

Downstream 100 bases:

>100_bases
GCGCGCGCTACGCTGAGCTCTACGTCCACGCGCCATGCCCGCTACGATGACCGACCTTGTGAGCCGTTATGCCGAACGCG
CCGCACCTGCCGCGTTGCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MAPTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVALFERSGRRLAPSREGQLLYDMAL
PLVESLDGLEAAFREKVRGLDAGELNIAANSSTILYLLPRIVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSM
LDVPADLNYAPVYRFEQLLITPPDHPLASKPIVTLQNLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIK
QYVAMGMGISIVTAICVTDADRDKLATRSLKDYFPTRSYGVVVRKGKYLSPQARAFIELIQPDLFTPRGYDESGHSER

Sequences:

>Translated_318_residues
MAPTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVALFERSGRRLAPSREGQLLYDMAL
PLVESLDGLEAAFREKVRGLDAGELNIAANSSTILYLLPRIVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSM
LDVPADLNYAPVYRFEQLLITPPDHPLASKPIVTLQNLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIK
QYVAMGMGISIVTAICVTDADRDKLATRSLKDYFPTRSYGVVVRKGKYLSPQARAFIELIQPDLFTPRGYDESGHSER
>Mature_317_residues
APTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVALFERSGRRLAPSREGQLLYDMALP
LVESLDGLEAAFREKVRGLDAGELNIAANSSTILYLLPRIVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSML
DVPADLNYAPVYRFEQLLITPPDHPLASKPIVTLQNLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIKQ
YVAMGMGISIVTAICVTDADRDKLATRSLKDYFPTRSYGVVVRKGKYLSPQARAFIELIQPDLFTPRGYDESGHSER

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787530, Length=295, Percent_Identity=27.7966101694915, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=30.952380952381, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789204, Length=262, Percent_Identity=28.2442748091603, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788296, Length=284, Percent_Identity=27.112676056338, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=26.6211604095563, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI157672245, Length=280, Percent_Identity=27.1428571428571, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790262, Length=285, Percent_Identity=26.6666666666667, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082132, Length=284, Percent_Identity=26.4084507042254, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787601, Length=221, Percent_Identity=26.2443438914027, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788887, Length=294, Percent_Identity=23.8095238095238, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790208, Length=293, Percent_Identity=24.9146757679181, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787879, Length=244, Percent_Identity=28.6885245901639, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790399, Length=272, Percent_Identity=24.6323529411765, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1786401, Length=309, Percent_Identity=26.537216828479, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=26.2068965517241, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081904, Length=216, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788297, Length=306, Percent_Identity=25.1633986928105, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082024, Length=164, Percent_Identity=27.4390243902439, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI2367136, Length=284, Percent_Identity=23.2394366197183, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35407; Mature: 35276

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVALFE
CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHH
RSGRRLAPSREGQLLYDMALPLVESLDGLEAAFREKVRGLDAGELNIAANSSTILYLLPR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH
IVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSMLDVPADLNYAPVYRFEQLLI
HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEE
TPPDHPLASKPIVTLQNLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIK
CCCCCCCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
QYVAMGMGISIVTAICVTDADRDKLATRSLKDYFPTRSYGVVVRKGKYLSPQARAFIELI
HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
QPDLFTPRGYDESGHSER
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
APTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVALFE
CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHH
RSGRRLAPSREGQLLYDMALPLVESLDGLEAAFREKVRGLDAGELNIAANSSTILYLLPR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH
IVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSMLDVPADLNYAPVYRFEQLLI
HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEE
TPPDHPLASKPIVTLQNLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIK
CCCCCCCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
QYVAMGMGISIVTAICVTDADRDKLATRSLKDYFPTRSYGVVVRKGKYLSPQARAFIELI
HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
QPDLFTPRGYDESGHSER
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]