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The map label for this gene is xynB [H]

Identifier: 66766498

GI number: 66766498

Start: 191917

End: 192906

Strand: Reverse

Name: xynB [H]

Synonym: XC_0153

Alternate gene names: 66766498

Gene position: 192906-191917 (Counterclockwise)

Preceding gene: 66766509

Following gene: 66766497

Centisome position: 3.75

GC content: 71.11

Gene sequence:

>990_bases
ATGCTTCTCAGCCTGGCCTTGCTCAGCGCTGGCGCCGCCGCCGCGGCCCCCGACGAGCGCCCCAGTGCGGACACCGCCGC
CGAGCAGGCCAGCCGTATTCCGTTGTGGCCGGCCGGAATGGCACCGGGGGACACCGCGCTGCCGCAACCGCAGCGCATCG
TGGAGCGCAGCAGCGATGCGGCCGTGCCGGACCGCTATATCCAGTCGATCAGCGCGCCGTACATGGTGGTGTACCGCCCT
GCCCGGCCCAACGGCACCGCGCTGCTGGTCACGCCCGGCGGCGGCTATCAGCGCATCGTGCTGGACAACGAAGGCACCTC
GCTGGTGCCGGGGTTTGTTGACCAGGCAGGCATCACCCTGTTCGTGCTGCGTTACCGCCTGCCCGGCGATGGCCACCCCA
ACGGCGCCGACGTACCGCTGGCCGACGCGCAGCGCGCGCTCCGGCTGATCCGCGCCAATGCCACGCGCTATGGCATCGAT
GCGCAGCGTGTGGGCGTGATGGGCTTCTCCGCCGGCGGGCATGTGGCCGCCAGCCTGGGCACCCGCTATGCCGCGCAGGT
GTATCCGGCGGTGGACCGCGCCGACACGCTGAGCGCACGCCCAGATTTCCAGCTCTTGATCTACCCGGTGATCGACATGG
ACGCCGCCAACGCGCACATGGGCTCGCGCGAGCGCCTGCTCGGCAATGCCCCCAGCGAGGCCAAGGTGCGCGCGTATTCG
CCGCAATGGCACGTGGATGCACGCACGCCGCCCACCTTCCTGCTGCATGCCCAGGACGACACCGTTGTTTCGGTACGCAA
CAGCCTGCTCCTGCACGATGCGCTGCTGCGCGCCGGCGTGCCGAGCGAGCTGCATGTGTTCCCGCAGGGCGGCCATGGCT
TCGGCACCCGCGGCACCACCGGGCTGACCCTGGCTGCATGGCCGCAACTGGCCCAGGCCTGGATCCAGCAGGTCAGCGCA
CCCGCCGCGCCGCAGGATGCGCCGCGGTGA

Upstream 100 bases:

>100_bases
TGCGCCGCAGCGAAGCAAACCCTGGGAGGGGTCGATGCAATACACCGATCGCAGGCACGCCCGGCGTGCCGTTTCCGTTG
TCGTACAAGGCTGCCGGGGC

Downstream 100 bases:

>100_bases
CGCGCGCCAACCGCGTTGATCCGCGCCGCCGCCTGCTGGTGTGTGGCGGCCTGCTGGCCGGCGCTGCCGCCGCAGTGCCC
AGCCTGAGCGCCGCCGCCGC

Product: xylanase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLLSLALLSAGAAAAAPDERPSADTAAEQASRIPLWPAGMAPGDTALPQPQRIVERSSDAAVPDRYIQSISAPYMVVYRP
ARPNGTALLVTPGGGYQRIVLDNEGTSLVPGFVDQAGITLFVLRYRLPGDGHPNGADVPLADAQRALRLIRANATRYGID
AQRVGVMGFSAGGHVAASLGTRYAAQVYPAVDRADTLSARPDFQLLIYPVIDMDAANAHMGSRERLLGNAPSEAKVRAYS
PQWHVDARTPPTFLLHAQDDTVVSVRNSLLLHDALLRAGVPSELHVFPQGGHGFGTRGTTGLTLAAWPQLAQAWIQQVSA
PAAPQDAPR

Sequences:

>Translated_329_residues
MLLSLALLSAGAAAAAPDERPSADTAAEQASRIPLWPAGMAPGDTALPQPQRIVERSSDAAVPDRYIQSISAPYMVVYRP
ARPNGTALLVTPGGGYQRIVLDNEGTSLVPGFVDQAGITLFVLRYRLPGDGHPNGADVPLADAQRALRLIRANATRYGID
AQRVGVMGFSAGGHVAASLGTRYAAQVYPAVDRADTLSARPDFQLLIYPVIDMDAANAHMGSRERLLGNAPSEAKVRAYS
PQWHVDARTPPTFLLHAQDDTVVSVRNSLLLHDALLRAGVPSELHVFPQGGHGFGTRGTTGLTLAAWPQLAQAWIQQVSA
PAAPQDAPR
>Mature_329_residues
MLLSLALLSAGAAAAAPDERPSADTAAEQASRIPLWPAGMAPGDTALPQPQRIVERSSDAAVPDRYIQSISAPYMVVYRP
ARPNGTALLVTPGGGYQRIVLDNEGTSLVPGFVDQAGITLFVLRYRLPGDGHPNGADVPLADAQRALRLIRANATRYGID
AQRVGVMGFSAGGHVAASLGTRYAAQVYPAVDRADTLSARPDFQLLIYPVIDMDAANAHMGSRERLLGNAPSEAKVRAYS
PQWHVDARTPPTFLLHAQDDTVVSVRNSLLLHDALLRAGVPSELHVFPQGGHGFGTRGTTGLTLAAWPQLAQAWIQQVSA
PAAPQDAPR

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 34849; Mature: 34849

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSLALLSAGAAAAAPDERPSADTAAEQASRIPLWPAGMAPGDTALPQPQRIVERSSDA
CEEEEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
AVPDRYIQSISAPYMVVYRPARPNGTALLVTPGGGYQRIVLDNEGTSLVPGFVDQAGITL
CCCHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCEECCCCHHHCCCEE
FVLRYRLPGDGHPNGADVPLADAQRALRLIRANATRYGIDAQRVGVMGFSAGGHVAASLG
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCHHHEEEEEECCCCCEEHHHC
TRYAAQVYPAVDRADTLSARPDFQLLIYPVIDMDAANAHMGSRERLLGNAPSEAKVRAYS
CHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEC
PQWHVDARTPPTFLLHAQDDTVVSVRNSLLLHDALLRAGVPSELHVFPQGGHGFGTRGTT
CCEEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
GLTLAAWPQLAQAWIQQVSAPAAPQDAPR
CEEEHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLLSLALLSAGAAAAAPDERPSADTAAEQASRIPLWPAGMAPGDTALPQPQRIVERSSDA
CEEEEEEHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
AVPDRYIQSISAPYMVVYRPARPNGTALLVTPGGGYQRIVLDNEGTSLVPGFVDQAGITL
CCCHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCEECCCCHHHCCCEE
FVLRYRLPGDGHPNGADVPLADAQRALRLIRANATRYGIDAQRVGVMGFSAGGHVAASLG
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCHHHEEEEEECCCCCEEHHHC
TRYAAQVYPAVDRADTLSARPDFQLLIYPVIDMDAANAHMGSRERLLGNAPSEAKVRAYS
CHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEC
PQWHVDARTPPTFLLHAQDDTVVSVRNSLLLHDALLRAGVPSELHVFPQGGHGFGTRGTT
CCEEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
GLTLAAWPQLAQAWIQQVSAPAAPQDAPR
CEEEHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]