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The map label for this gene is rhgT [H]

Identifier: 66766496

GI number: 66766496

Start: 189322

End: 190236

Strand: Reverse

Name: rhgT [H]

Synonym: XC_0151

Alternate gene names: 66766496

Gene position: 190236-189322 (Counterclockwise)

Preceding gene: 66766497

Following gene: 66766490

Centisome position: 3.69

GC content: 68.63

Gene sequence:

>915_bases
ATGTGCACGGCGTTGTCGGCGCAGGCGGCCGCTGCTGCAACGGCCGCTGCAGCAGCGCCAGCGGCGTCTGCGTCCACCAT
GCCCGTGTCCGCGACATCCACCACACCGTTGGCCGCCAGCAAGATCGTGTTGGTCGGCGATTCGACCACCGCCGTGCAAG
GCGGCTGGGGACCGAGTTTCTGCGCCCAGCATGTCACCTCGTTTCTGAGCTGCCTCAACCTGGCACGCGGTGGCCGCAGT
ACGTCCAACTACCGCGCCGAAGGTTCGTGGGAGATCGCGCTGAAGGAACTGCGCAGCGGCGGCTATCGACAGGTGGTGGT
GCTGATCCAGTTCGGCCATAACGATCAACCCGGCAAACCGGGGCGCTCCACCGATCTGGCCACTGAATTCCCGGCCAACC
TGCGTCGCTACGTCAACGACGCGCGTGCGGCCGGGGCGCTGCCGGTGCTGGTGACGCCGCTGACGCGGCGGCAGTTCGAA
CGCGGCCAGTTGATCGACGACCTGGCGCCGTGGGCAGCGGCCACGCGTGCGGTGGCACGCGAGCTGCAGGTGCCACTCAT
CGACCTGCACGCGCGCAGCCGGGCGCTGGTGCAAGGCATGGGCCCGGTGCTGGCAATGCGGCTGGCGCAGCAGCCGGCCG
AGCCGGCGCAACTGGTTGCCGCGCAATCGGGCACCACCATCGGCAAGACACCGGCGCAGACGGTGGCGCCCTCTTCGGCG
CCTGCGTCAGTGGCGAAGACCACCACCGCCGTTGCCACGGCGCAGGACAACGCCAGCGCAGAACCGATGGGCCAGGCCAA
GCTCGCGTTCGACTACACGCATCTCGGCGCCGATGGTGCAGACCTGTTTGCGGCGATCGTCGCCGATGAGTTGGCGCAGC
ACGTGCCTGCATTGCGGCCGTTGTTGATTCCGTGA

Upstream 100 bases:

>100_bases
TATCAACAAGCCCCCTTCATTCAACGCGGCACGTTCTGACCGCCCTGCTCTACGGTGATCCATGCGTATGTTTTCTTTCG
CGGCGTTGACACTATTGGCC

Downstream 100 bases:

>100_bases
TGTTCTGCGTTGGTGCTGCTGTCGTGCAACAGCTCACTGCACAGGCACGCGCTGCCATGACTGCGGGCACGCCGCCTGCT
GTTCGATTGCTTCTTGCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: RGAE [H]

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MCTALSAQAAAAATAAAAAPAASASTMPVSATSTTPLAASKIVLVGDSTTAVQGGWGPSFCAQHVTSFLSCLNLARGGRS
TSNYRAEGSWEIALKELRSGGYRQVVVLIQFGHNDQPGKPGRSTDLATEFPANLRRYVNDARAAGALPVLVTPLTRRQFE
RGQLIDDLAPWAAATRAVARELQVPLIDLHARSRALVQGMGPVLAMRLAQQPAEPAQLVAAQSGTTIGKTPAQTVAPSSA
PASVAKTTTAVATAQDNASAEPMGQAKLAFDYTHLGADGADLFAAIVADELAQHVPALRPLLIP

Sequences:

>Translated_304_residues
MCTALSAQAAAAATAAAAAPAASASTMPVSATSTTPLAASKIVLVGDSTTAVQGGWGPSFCAQHVTSFLSCLNLARGGRS
TSNYRAEGSWEIALKELRSGGYRQVVVLIQFGHNDQPGKPGRSTDLATEFPANLRRYVNDARAAGALPVLVTPLTRRQFE
RGQLIDDLAPWAAATRAVARELQVPLIDLHARSRALVQGMGPVLAMRLAQQPAEPAQLVAAQSGTTIGKTPAQTVAPSSA
PASVAKTTTAVATAQDNASAEPMGQAKLAFDYTHLGADGADLFAAIVADELAQHVPALRPLLIP
>Mature_304_residues
MCTALSAQAAAAATAAAAAPAASASTMPVSATSTTPLAASKIVLVGDSTTAVQGGWGPSFCAQHVTSFLSCLNLARGGRS
TSNYRAEGSWEIALKELRSGGYRQVVVLIQFGHNDQPGKPGRSTDLATEFPANLRRYVNDARAAGALPVLVTPLTRRQFE
RGQLIDDLAPWAAATRAVARELQVPLIDLHARSRALVQGMGPVLAMRLAQQPAEPAQLVAAQSGTTIGKTPAQTVAPSSA
PASVAKTTTAVATAQDNASAEPMGQAKLAFDYTHLGADGADLFAAIVADELAQHVPALRPLLIP

Specific function: May play role in the degradation of type I rhamnogalacturonan derived from plant cell walls. This enzyme has a broad substrate specificity, and shows strong preference for glucose pentaacetate, beta-naphthylacetate, and p-nitrophenyl acetate (pNPA). Also

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'GDSL' lipolytic enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 31307; Mature: 31307

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTALSAQAAAAATAAAAAPAASASTMPVSATSTTPLAASKIVLVGDSTTAVQGGWGPSF
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCHHH
CAQHVTSFLSCLNLARGGRSTSNYRAEGSWEIALKELRSGGYRQVVVLIQFGHNDQPGKP
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC
GRSTDLATEFPANLRRYVNDARAAGALPVLVTPLTRRQFERGQLIDDLAPWAAATRAVAR
CCCCCCCHHCHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHHH
ELQVPLIDLHARSRALVQGMGPVLAMRLAQQPAEPAQLVAAQSGTTIGKTPAQTVAPSSA
HHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHCCCCCC
PASVAKTTTAVATAQDNASAEPMGQAKLAFDYTHLGADGADLFAAIVADELAQHVPALRP
CCHHHHHHHHEEECCCCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
LLIP
CCCC
>Mature Secondary Structure
MCTALSAQAAAAATAAAAAPAASASTMPVSATSTTPLAASKIVLVGDSTTAVQGGWGPSF
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCHHH
CAQHVTSFLSCLNLARGGRSTSNYRAEGSWEIALKELRSGGYRQVVVLIQFGHNDQPGKP
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC
GRSTDLATEFPANLRRYVNDARAAGALPVLVTPLTRRQFERGQLIDDLAPWAAATRAVAR
CCCCCCCHHCHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHHH
ELQVPLIDLHARSRALVQGMGPVLAMRLAQQPAEPAQLVAAQSGTTIGKTPAQTVAPSSA
HHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHCCCCCC
PASVAKTTTAVATAQDNASAEPMGQAKLAFDYTHLGADGADLFAAIVADELAQHVPALRP
CCHHHHHHHHEEECCCCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
LLIP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]