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The map label for this gene is cmpR [H]

Identifier: 66048286

GI number: 66048286

Start: 6005656

End: 6006606

Strand: Direct

Name: cmpR [H]

Synonym: Psyr_5062

Alternate gene names: 66048286

Gene position: 6005656-6006606 (Clockwise)

Preceding gene: 66048283

Following gene: 66048287

Centisome position: 98.56

GC content: 60.67

Gene sequence:

>951_bases
ATGCGTAAGTCATTGATGCGTATGACATTGCGTCAGTTGCGCATTTTCAATGAAGTGTGCGATCTGCGCTCCTACAGCCG
TGCGGCCGAAGAGATGTCGCTGACACAGCCCGCTGTCAGCCTGCAGATTCGCCAGCTTGAAGAGCTGATCGGCCAGCCGC
TGTTCGAATACGTCAGCAAAAAGCTCTACCTGACCGAAGCGGCGCAAGCGCTGCAACAGGCCAGCCGGGACATTTTCGGG
CGCCTGGAAAGCCTGGACATGCAGCTCTCCGACATGCAGGGCTCGCTGCAGGGCCAGTTGAAGCTGGCCGTCGAGTCGAG
CTGCAAGTACTTCATCCCTCACCTGTTCGCCGCCTTCAAGCGCCAGCACCCGGAAGTCAGCCTGAGCCTGATGGTGGTCA
ATCGCGCGCAAGTCATCAGGCGCCTGGCGGATAACCGCGATGATCTTGTGGTGATGTCGGCAGTGCCGCTGGACATGGGT
CTGGAGTTCTTGCCGTTCCTGAATAACCCGATTGTCGCCGTAGCGCCGCCTGACCATCCGCTGAGCAGCCGCGCGACGCT
GAACCTGAAAGATCTGGAGCCATGGCCGTTGCTGACCCGAGAAACAGGATCAGGCACGCGTCGGGCCTGCGAGGAATTTT
TCAAAGAGAAGCGCGTGCATTTCACGCAGACGCTGGAAGTGTCCTCCAGCGAAGCACAACGTGAATGTGTGGTTGCCGGG
CTGGGCCTGGCGATGCTGACCCGACACGCGGTCTGCCAGGAACTCGCCACAGGCGCCCTGGTGGAGCTGCCCGTGGCGGA
GTTGCCGCTGTATCGCAGCTGGTGTGTGGCTCAGGCCGGGGACAAACGCCTTTCACCCGTGGCACATGCGTTTCTTGCGT
TCATCCGCAGTGAACGTGCGCAGATCAGCCAGCTTGTCGAGCGTTTCGACGGTCGACCGCGGGCAACTTGA

Upstream 100 bases:

>100_bases
CTATGCCCAATCGAGGATTAACAAAAATGAGTAAAAGTTGGGAGGTGCATAAGTAAAAGCTTATAGTTGAGGCTTCAGCA
GCGTCAGGAAGCTTTTATAA

Downstream 100 bases:

>100_bases
TCGCCTGCCACACGGCGTTGTCCATGCCGTCCATGTAGTCGCACAACTCCTGATTGAGCTGACGTGCCTCACTGTAGCTT
TCAATTGCCCGACGAAACTC

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MRKSLMRMTLRQLRIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFEYVSKKLYLTEAAQALQQASRDIFG
RLESLDMQLSDMQGSLQGQLKLAVESSCKYFIPHLFAAFKRQHPEVSLSLMVVNRAQVIRRLADNRDDLVVMSAVPLDMG
LEFLPFLNNPIVAVAPPDHPLSSRATLNLKDLEPWPLLTRETGSGTRRACEEFFKEKRVHFTQTLEVSSSEAQRECVVAG
LGLAMLTRHAVCQELATGALVELPVAELPLYRSWCVAQAGDKRLSPVAHAFLAFIRSERAQISQLVERFDGRPRAT

Sequences:

>Translated_316_residues
MRKSLMRMTLRQLRIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFEYVSKKLYLTEAAQALQQASRDIFG
RLESLDMQLSDMQGSLQGQLKLAVESSCKYFIPHLFAAFKRQHPEVSLSLMVVNRAQVIRRLADNRDDLVVMSAVPLDMG
LEFLPFLNNPIVAVAPPDHPLSSRATLNLKDLEPWPLLTRETGSGTRRACEEFFKEKRVHFTQTLEVSSSEAQRECVVAG
LGLAMLTRHAVCQELATGALVELPVAELPLYRSWCVAQAGDKRLSPVAHAFLAFIRSERAQISQLVERFDGRPRAT
>Mature_316_residues
MRKSLMRMTLRQLRIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFEYVSKKLYLTEAAQALQQASRDIFG
RLESLDMQLSDMQGSLQGQLKLAVESSCKYFIPHLFAAFKRQHPEVSLSLMVVNRAQVIRRLADNRDDLVVMSAVPLDMG
LEFLPFLNNPIVAVAPPDHPLSSRATLNLKDLEPWPLLTRETGSGTRRACEEFFKEKRVHFTQTLEVSSSEAQRECVVAG
LGLAMLTRHAVCQELATGALVELPVAELPLYRSWCVAQAGDKRLSPVAHAFLAFIRSERAQISQLVERFDGRPRAT

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=27.681660899654, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=23.3676975945017, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1790399, Length=262, Percent_Identity=26.7175572519084, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082132, Length=289, Percent_Identity=25.9515570934256, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787879, Length=266, Percent_Identity=26.3157894736842, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI157672245, Length=231, Percent_Identity=27.2727272727273, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=25.7936507936508, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786401, Length=307, Percent_Identity=24.7557003257329, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789204, Length=258, Percent_Identity=25.968992248062, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=301, Percent_Identity=25.9136212624585, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790208, Length=243, Percent_Identity=25.5144032921811, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787949, Length=289, Percent_Identity=26.2975778546713, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=25.8196721311475, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI145693193, Length=269, Percent_Identity=26.7657992565056, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788887, Length=302, Percent_Identity=23.1788079470199, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788748, Length=304, Percent_Identity=22.6973684210526, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081904, Length=264, Percent_Identity=24.6212121212121, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787806, Length=279, Percent_Identity=22.9390681003584, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789173, Length=140, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787128, Length=267, Percent_Identity=23.9700374531835, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788297, Length=245, Percent_Identity=22.8571428571429, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35626; Mature: 35626

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSLMRMTLRQLRIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFEYVSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHH
KLYLTEAAQALQQASRDIFGRLESLDMQLSDMQGSLQGQLKLAVESSCKYFIPHLFAAFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEHHCCHHHHHHHHHHHH
RQHPEVSLSLMVVNRAQVIRRLADNRDDLVVMSAVPLDMGLEFLPFLNNPIVAVAPPDHP
HCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEECCHHHCCHHHHHCCCCEEEECCCCCC
LSSRATLNLKDLEPWPLLTRETGSGTRRACEEFFKEKRVHFTQTLEVSSSEAQRECVVAG
CCCCCEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHH
LGLAMLTRHAVCQELATGALVELPVAELPLYRSWCVAQAGDKRLSPVAHAFLAFIRSERA
HHHHHHHHHHHHHHHHCCCEEECCHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QISQLVERFDGRPRAT
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRKSLMRMTLRQLRIFNEVCDLRSYSRAAEEMSLTQPAVSLQIRQLEELIGQPLFEYVSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHH
KLYLTEAAQALQQASRDIFGRLESLDMQLSDMQGSLQGQLKLAVESSCKYFIPHLFAAFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEHHCCHHHHHHHHHHHH
RQHPEVSLSLMVVNRAQVIRRLADNRDDLVVMSAVPLDMGLEFLPFLNNPIVAVAPPDHP
HCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEECCHHHCCHHHHHCCCCEEEECCCCCC
LSSRATLNLKDLEPWPLLTRETGSGTRRACEEFFKEKRVHFTQTLEVSSSEAQRECVVAG
CCCCCEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHH
LGLAMLTRHAVCQELATGALVELPVAELPLYRSWCVAQAGDKRLSPVAHAFLAFIRSERA
HHHHHHHHHHHHHHHHCCCEEECCHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QISQLVERFDGRPRAT
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA