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The map label for this gene is rhsD [H]

Identifier: 66048214

GI number: 66048214

Start: 5918400

End: 5921003

Strand: Direct

Name: rhsD [H]

Synonym: Psyr_4990

Alternate gene names: 66048214

Gene position: 5918400-5921003 (Clockwise)

Preceding gene: 66048213

Following gene: 66048215

Centisome position: 97.12

GC content: 56.14

Gene sequence:

>2604_bases
TTGCCCGACGATAATTGGCTGGCACTCAAGTACGACCACCTCTCGCGACTGGTCGAAGAAACCGACCCGCTAGGGCGCAA
GATCACCTACAAGCATCATCTGGCGACCACGCTGGTGACACAGACGACTTTCCCTGATGGCAGCACGTGGAAGGCCCGTT
ACGATTCCAGAGGCAATCTTCTGGTCGAAACCGACGCACTTGGGAACAAGACCGAATACCTCAACAGTGAAGATGGCCTG
CCACACACCATCATTGATGCGACCTACAAATCCAAATACCTGTGGTGGAACAGCCTCGCTCAGGTTGTGCACTTTCAGGA
CTGTTCAGGCAAAGACACTTATTACCGCTATGACGATCGCGGTCATCTGATCGCCGTCACCGATGCCCTGAACAACACCA
CCACGCTGGAACGCAAACCCGACGGCGAAGTGCTGCGCATCAACCATCCCGATGGCAGCGTTGAGTCCTTCACCTATAAC
GCGCTCGGCCAGGTGCTTTCGCACACCGACGGCAAAGGCCAGATAACGCGGTTGTCCCGCAACGCCCGTGGCCTGCCCAC
CCGGCGCGAGGACGCCAAGGGCAAAGCCGTTGCCTACCAGTACGACAAGGCCATTCGCCTAACGGCACTGGTCAACGAAA
ACAACGCCACTTACAACTTCGTGTACGACAACGCAGACCGTCTGATCGAAGAAAAACGCATCGACAACCTCACTCGCCGT
TTCAGCTACAACCTCGGCGGGCACCTGACACAGGTCGAGGAAATCGGCTACGGCGAAAAAGGCGAACAACCACGGCGCAG
CACCCACCTGGAGCGCGACCCGATTGGTCGCCTGCTCGCCAAACTCAACGACGACGCGCGCCAAAACTACGCCTACGACG
ACGGCGACCGACTGCTGTCAATCGAGCGCAAGCCGACGGACACCGGCAGAAAACTCGGTGTTGCCGCCGAGAAACTGGAA
TTTGCCTACGACCTGCTCGGCCGCCTCGTCAAAGAGACCACATCCCAAGGCGCACTTGCCTACGAGTACGATCCGCTCAG
CAACCTGACCACGCTGACACTTCCTACCGGCCAGCACCTGAATCACCTGTACTACGGCAGCGGTCACCTGCACCAGTTGA
ACCTCGATGGCCAGTTGATCAGCGACATGGAACGCGACGATCTCCATCGCGAGATCTACCGCACCCAAGGCAAGCTGACC
AGTTGCTTCGGCTATGACAGCATGGGACGCAAGGCCTGGCAGTACGCCACAACCCTGCCCGCTGAAAAGCTATCGCAGAT
CCAGAACCCGCTCATAAAGCCAGAGCGCTACGTCGAACACGCTTACAACCCGATTCACCGCCGCTACGAATACGACCCTG
CCGGCGAACTGAGCCGCACCCTCGACAAACTGCGCGGCGAAACCCAGTATGAATACGAAGCCAACGGCCAGTTGCTGGCG
CGCAACACCGGCCGAGTGGTCGACGGCGAGGAATTCCGCTACGACGCCGCTGCCAACCGCCTCAACTTCAACACCAGCCG
CTTCGATCACGTCAAAGACAACCGCCTCAGACAATGGGCGAACCACGAATACAAATACGACGCCTGGGGCAACCTGATCG
AAACAGTTGTCGGCATCGTACGCTGGCAGACTTTCACCTACGACTGCGAAAACCGCCTGGTCAAAACCGAGACCATGGCC
GACACGCAGGTGGAAAGTACCAGCAGTTACCAGTACGACAGTCTTGGCAGGCGCGTCGCCAAACAGTCCGAGATCAAAGG
CCAGACCGACCACAAACGCTTCCTCTGGCAAGGCTTGCGCATGCTGCGTGAGGAAAGTCCGGGCCAGAGCAGCCTGTATA
TCTACGAGCCCGGCAGCTATGCGCCGCTGGCACGCGTGGATGAAAAAGAAGGCGAGGTAGAGAACACGGTTTACTACTTC
CACACCGACCAGATCGGTACACCGCTGGAAATGACCGACGCCGAAGGGCAGATTGTCTGGCAGGCCAAGTACCGGGCGTG
GGGGGCGGTTGAGAAGCTGGTGGTGAACAAGGTCGAGCAGAACCTAAGGTTTCAAGGGCAGTATTTTGATGCCGAGACGG
GGCTGCATTACAATACGTTTCGGTATTATGACCCGGAGATTGGGCGGTTTATTACGCAGGATCCGATTGGGTTGTTGGGT
GGGTTTAATCTTTATCAATATGCCCCTAATACCAACGGATGGATTGACCCGCTTGGATGGACTGGGCTAGATGCAAGCGG
CCGCCCTCTTTCAAGTAGTCAATACAGCGTTTGGAGTAGCGTAGAAATGCCCACAGAAATTCATGGATCTGGGCGCAGCA
CCCACTTCAAGTACGCTAACGAGGAGTTATATAATAGAACATTAAAAAGCCCTGAACTAAAGTCAGCTCTTCCTCCAGAA
GTAGTAGAGCACATTCAACCTGGTCCTAGAGGAGGTTTCAGTGATAGAAGCCCTCCAAACCATTCGTGGCATCATAATGC
TCAAAGCCCTAAAGATATTGAGTTGATGCCTAGAGCGCAACATAAGGCTCCAGGCCCCGTACAGAACAGCCTCCACCCTA
ACCAGCAGGGTGGATTTAAAAAGCTGCAAAGCTCAGCATGTTGA

Upstream 100 bases:

>100_bases
TTTAAAGCCTCTCTTAAAACCTTACGTAAATTAGTTATACGCTATTTAAAAATCTAGACTATAGGAGAGTGCTGATATTT
TCAGCACCTTTCCTGTTACG

Downstream 100 bases:

>100_bases
GGTGAAGATGAAAACTTATAGCATTAGAGAAGTTATTTTAAACATATCAGAGATGCCAGACTCATGGTTTTATCTTCCTG
ACACCCCCTGGACATTGGAT

Product: YD repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 867; Mature: 866

Protein sequence:

>867_residues
MPDDNWLALKYDHLSRLVEETDPLGRKITYKHHLATTLVTQTTFPDGSTWKARYDSRGNLLVETDALGNKTEYLNSEDGL
PHTIIDATYKSKYLWWNSLAQVVHFQDCSGKDTYYRYDDRGHLIAVTDALNNTTTLERKPDGEVLRINHPDGSVESFTYN
ALGQVLSHTDGKGQITRLSRNARGLPTRREDAKGKAVAYQYDKAIRLTALVNENNATYNFVYDNADRLIEEKRIDNLTRR
FSYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAKLNDDARQNYAYDDGDRLLSIERKPTDTGRKLGVAAEKLE
FAYDLLGRLVKETTSQGALAYEYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLT
SCFGYDSMGRKAWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLA
RNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNLIETVVGIVRWQTFTYDCENRLVKTETMA
DTQVESTSSYQYDSLGRRVAKQSEIKGQTDHKRFLWQGLRMLREESPGQSSLYIYEPGSYAPLARVDEKEGEVENTVYYF
HTDQIGTPLEMTDAEGQIVWQAKYRAWGAVEKLVVNKVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLG
GFNLYQYAPNTNGWIDPLGWTGLDASGRPLSSSQYSVWSSVEMPTEIHGSGRSTHFKYANEELYNRTLKSPELKSALPPE
VVEHIQPGPRGGFSDRSPPNHSWHHNAQSPKDIELMPRAQHKAPGPVQNSLHPNQQGGFKKLQSSAC

Sequences:

>Translated_867_residues
MPDDNWLALKYDHLSRLVEETDPLGRKITYKHHLATTLVTQTTFPDGSTWKARYDSRGNLLVETDALGNKTEYLNSEDGL
PHTIIDATYKSKYLWWNSLAQVVHFQDCSGKDTYYRYDDRGHLIAVTDALNNTTTLERKPDGEVLRINHPDGSVESFTYN
ALGQVLSHTDGKGQITRLSRNARGLPTRREDAKGKAVAYQYDKAIRLTALVNENNATYNFVYDNADRLIEEKRIDNLTRR
FSYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAKLNDDARQNYAYDDGDRLLSIERKPTDTGRKLGVAAEKLE
FAYDLLGRLVKETTSQGALAYEYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLT
SCFGYDSMGRKAWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLA
RNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNLIETVVGIVRWQTFTYDCENRLVKTETMA
DTQVESTSSYQYDSLGRRVAKQSEIKGQTDHKRFLWQGLRMLREESPGQSSLYIYEPGSYAPLARVDEKEGEVENTVYYF
HTDQIGTPLEMTDAEGQIVWQAKYRAWGAVEKLVVNKVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLG
GFNLYQYAPNTNGWIDPLGWTGLDASGRPLSSSQYSVWSSVEMPTEIHGSGRSTHFKYANEELYNRTLKSPELKSALPPE
VVEHIQPGPRGGFSDRSPPNHSWHHNAQSPKDIELMPRAQHKAPGPVQNSLHPNQQGGFKKLQSSAC
>Mature_866_residues
PDDNWLALKYDHLSRLVEETDPLGRKITYKHHLATTLVTQTTFPDGSTWKARYDSRGNLLVETDALGNKTEYLNSEDGLP
HTIIDATYKSKYLWWNSLAQVVHFQDCSGKDTYYRYDDRGHLIAVTDALNNTTTLERKPDGEVLRINHPDGSVESFTYNA
LGQVLSHTDGKGQITRLSRNARGLPTRREDAKGKAVAYQYDKAIRLTALVNENNATYNFVYDNADRLIEEKRIDNLTRRF
SYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAKLNDDARQNYAYDDGDRLLSIERKPTDTGRKLGVAAEKLEF
AYDLLGRLVKETTSQGALAYEYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTS
CFGYDSMGRKAWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLAR
NTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNLIETVVGIVRWQTFTYDCENRLVKTETMAD
TQVESTSSYQYDSLGRRVAKQSEIKGQTDHKRFLWQGLRMLREESPGQSSLYIYEPGSYAPLARVDEKEGEVENTVYYFH
TDQIGTPLEMTDAEGQIVWQAKYRAWGAVEKLVVNKVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLGG
FNLYQYAPNTNGWIDPLGWTGLDASGRPLSSSQYSVWSSVEMPTEIHGSGRSTHFKYANEELYNRTLKSPELKSALPPEV
VEHIQPGPRGGFSDRSPPNHSWHHNAQSPKDIELMPRAQHKAPGPVQNSLHPNQQGGFKKLQSSAC

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=716, Percent_Identity=28.072625698324, Blast_Score=176, Evalue=6e-45,
Organism=Escherichia coli, GI1786917, Length=712, Percent_Identity=26.9662921348315, Blast_Score=171, Evalue=2e-43,
Organism=Escherichia coli, GI48994942, Length=712, Percent_Identity=26.8258426966292, Blast_Score=168, Evalue=1e-42,
Organism=Escherichia coli, GI1790020, Length=712, Percent_Identity=26.8258426966292, Blast_Score=168, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 99253; Mature: 99122

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDDNWLALKYDHLSRLVEETDPLGRKITYKHHLATTLVTQTTFPDGSTWKARYDSRGNL
CCCCCEEEEEHHHHHHHHHHCCCCCCEEEEHHHHHHHHEEEECCCCCCCEEEEECCCCCE
LVETDALGNKTEYLNSEDGLPHTIIDATYKSKYLWWNSLAQVVHFQDCSGKDTYYRYDDR
EEEECCCCCHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHEECCCCCCCCEEEECCC
GHLIAVTDALNNTTTLERKPDGEVLRINHPDGSVESFTYNALGQVLSHTDGKGQITRLSR
CCEEEEEECCCCCEEECCCCCCCEEEEECCCCCCHHEEHHHHHHHHHCCCCCCEEEEECC
NARGLPTRREDAKGKAVAYQYDKAIRLTALVNENNATYNFVYDNADRLIEEKRIDNLTRR
CCCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHH
FSYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAKLNDDARQNYAYDDGDRLLS
HCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCCEEEE
IERKPTDTGRKLGVAAEKLEFAYDLLGRLVKETTSQGALAYEYDPLSNLTTLTLPTGQHL
EECCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCC
NHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDSMGRKAWQYATTLP
CEEEECCCCEEEECCCCHHHHHCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCC
AEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLA
HHHHHHHHCCCCCHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEE
RNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNLIETVVGIV
ECCCCEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHH
RWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGQTDHKRFLWQGLR
HHEEEEEECCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
MLREESPGQSSLYIYEPGSYAPLARVDEKEGEVENTVYYFHTDQIGTPLEMTDAEGQIVW
HHHHCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEEE
QAKYRAWGAVEKLVVNKVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLG
EECHHHHHHHHHHHHHHHHHCCEECCEEECCCCCCEECCEEEECCHHHCCCCCCCHHHHC
GFNLYQYAPNTNGWIDPLGWTGLDASGRPLSSSQYSVWSSVEMPTEIHGSGRSTHFKYAN
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHCCCCCCCCEEEECC
EELYNRTLKSPELKSALPPEVVEHIQPGPRGGFSDRSPPNHSWHHNAQSPKDIELMPRAQ
HHHHHHHCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
HKAPGPVQNSLHPNQQGGFKKLQSSAC
CCCCCCCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
PDDNWLALKYDHLSRLVEETDPLGRKITYKHHLATTLVTQTTFPDGSTWKARYDSRGNL
CCCCEEEEEHHHHHHHHHHCCCCCCEEEEHHHHHHHHEEEECCCCCCCEEEEECCCCCE
LVETDALGNKTEYLNSEDGLPHTIIDATYKSKYLWWNSLAQVVHFQDCSGKDTYYRYDDR
EEEECCCCCHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHEECCCCCCCCEEEECCC
GHLIAVTDALNNTTTLERKPDGEVLRINHPDGSVESFTYNALGQVLSHTDGKGQITRLSR
CCEEEEEECCCCCEEECCCCCCCEEEEECCCCCCHHEEHHHHHHHHHCCCCCCEEEEECC
NARGLPTRREDAKGKAVAYQYDKAIRLTALVNENNATYNFVYDNADRLIEEKRIDNLTRR
CCCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHH
FSYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAKLNDDARQNYAYDDGDRLLS
HCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCCEEEE
IERKPTDTGRKLGVAAEKLEFAYDLLGRLVKETTSQGALAYEYDPLSNLTTLTLPTGQHL
EECCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCC
NHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDSMGRKAWQYATTLP
CEEEECCCCEEEECCCCHHHHHCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCC
AEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLA
HHHHHHHHCCCCCHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEE
RNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNLIETVVGIV
ECCCCEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHH
RWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGQTDHKRFLWQGLR
HHEEEEEECCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
MLREESPGQSSLYIYEPGSYAPLARVDEKEGEVENTVYYFHTDQIGTPLEMTDAEGQIVW
HHHHCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEEE
QAKYRAWGAVEKLVVNKVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLG
EECHHHHHHHHHHHHHHHHHCCEECCEEECCCCCCEECCEEEECCHHHCCCCCCCHHHHC
GFNLYQYAPNTNGWIDPLGWTGLDASGRPLSSSQYSVWSSVEMPTEIHGSGRSTHFKYAN
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHCCCCCCCCEEEECC
EELYNRTLKSPELKSALPPEVVEHIQPGPRGGFSDRSPPNHSWHHNAQSPKDIELMPRAQ
HHHHHHHCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
HKAPGPVQNSLHPNQQGGFKKLQSSAC
CCCCCCCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]