Click here to switch to the map view.

The map label for this gene is clpV1 [H]

Identifier: 66048182

GI number: 66048182

Start: 5876740

End: 5879343

Strand: Direct

Name: clpV1 [H]

Synonym: Psyr_4958

Alternate gene names: 66048182

Gene position: 5876740-5879343 (Clockwise)

Preceding gene: 66048181

Following gene: 66048183

Centisome position: 96.44

GC content: 62.25

Gene sequence:

>2604_bases
GTGAACCTGAAGTCCCTGTTCGCCAAGCTGAACGAAACGAGCCGCACTGCCACTGAAAGCGCTGCTGCGCTGTGCCTGTC
GGAGAACCATTACGACGTTGAAGTCGAGCACTTGCTGCTGCAACTGCTCGATAACAACGACAACGATCTGCCAGTGATCC
TGCGCCACTACGATGTGGTGCCTGATCGCCTGCAGGCACAGTTGGTCACTGCGCTGGGGACGTTCAAGAAAGGCAACACG
CGGACGCCTGCGCTCTCGCCGCACATCACGCGCATGATCGAGCAGGCTTGGGTGCTGGCATCGATCGAGTTCGGTCAGTC
ACAGATCCGTACCGGCCATCTTGTGCAGGCCTTGCTGGATGACGATGCACTGCGTCGCGTGGTCATCGGCTCGGCGCCGG
AGCTGGAGAAGATCAACGCTGACGACCTGCGCCTGAACATGAGCGCGCTGGTCGAGGGCAGCCCCGAGACCAAGCTGAGC
AAGCCACTGGCGAACGCCGACGCCAGCACGGGCGCCACCACCAAAGGTAACGGCAAGACGCCAGCCCTGGACCAGTACAC
CGTCAACCTGACCCAGAGCGCTCGCGATGGTCGCATTGACCCGGTGCTGGGACGCGAATTCGAAGTGCGGCAGATGGTCG
ACATCCTGACCCGCCGCCGCCAGAACAACCCGATCCTGACCGGTGAAGCCGGCGTCGGTAAAACAGCCGTGGTGGAAGGC
CTGGCGCTGCGCATTGTGCAGGGCGACGTGCCGTCGGTGCTCAAGGGCGTTGCCATTCACACGCTGGATCTGGGCCTGTT
GCAGGCCGGTGCCGGGGTCAAGGGCGAGTTCGAAAACCGCCTCAAGTCGGTCATCGAAGAAACCAAACGCAGCCTGCACC
CGATCATTCTGTTTATCGATGAAGCCCACACGCTGATCGGTTCGGGCGGGCAAGCCGGGCAGAACGATGCCGCCAACCTG
CTCAAGCCTGCCTTGGCACGCGGTGAGCTGCGCACCATCGCCGCCACAACCTGGGCCGAGTACAAAAAGTATTTCGAGAA
GGATGCCGCACTGGCTCGACGCTTCCAGGTGGTGAAAGTCGAAGAGCCTGACGAAGACAAGGCCATCCACATGCTTCGCG
GGTTGCTGGCGAAGATGCAGGAACACCACAAGGTCACGGTGATGGATGAAGCGCTGGTGCAGGCCGTGCGCCTGTCCAAC
CGCTACATCACCGGCCGCCAGTTGCCGGACAAGGCAGTCAGCGTACTCGACACCGCTTGCGCACGCGTTGCCCTGGGCCA
GTCGGCACAGCCGGGAGCGCTGGAGGACTGCAAGCGTCACATCGACAACCTGAACGCGGAAATCACCGTACTGGAGCAGG
AAACCGCCAAGGGCAGCGACCACGCTCGGCGTCTGACGGCCCTGCACGAAGAGCTGCAGGCCGAACAGGAGACCCGCGAG
TCGCTGGAGCAACAGTGGAAGCGCGAGCTGGAGCTGGTCGAGAAGCTTGGCGCACTCAGCGTTCCGCAAAGCGGCGAGCC
TGATGCCGGGCAGATTGCCGCCGTACGCGCCGAACTAGCCAGCGTGCAGGGCGAGCAACCGCTGGTCCACGCACTGGTCG
ATGGCGGCACGATTGGCGAAGTGATTTCCGGCTGGACCGGCATTCCGCTGGGCAAGATGCTGCGCGACGAAATCGACACC
GTGCAGAGCCTGCCCGCGCTGCTGGGCGAACGCGTACTGGGTCAGGACCATGCACTCGAAGAAATCGGCAAGCGCATCAA
GATTTCCCGTGCCCGCATGGAAGACCCGAACAAGCCGATCGGCGTGTTCCTGCTGCTGGGCCCGAGCGGCGTCGGCAAGA
CCGAAACGGCACTGGCCCTGGCTGACACGCTGTATGGCGGCGAACGTAACGTCATCACCATCAACATGTCCGAATACCAG
GAAGCCCACACCGTCTCCAGCCTGAAAGGCTCACCGCCTGGCTACGTCGGTTACGGCGAAGGTGGCGTGCTCACCGAAGC
CGTACGCCGCAAGCCTTATAGCGTGGTGCTGCTCGACGAGGTGGAGAAAGCCCACCCGGATGTGCTCGAGCTGTTTTTCC
AGGTCTTCGACAAAGGCGTGCTGGACGATGGCGAAGGTCGCGAGATCAACTTCCGCAACACCGTGATCATCCTCACCTCC
AACACCGGCACTGATCGCATCATGCAGTGGTGCCTGAACACAGAGCAGAAGCCGACCCCCGATGACATCGTGGAAGGCCT
GCGCGACGAGCTGAATCAGGTGTTCAAACCGGCCTTCCTGGGTCGCCTGACCATCGTGCCGTATTACCCGGTACAGGACG
CGATTCTGGAGCGCATCGTCGGCCTGAAGCTGGAGCGCATTCGCAAGCGTTTCGAGCGCAATCATCAGGCGGTGCTGCGT
TACGACGAAGCACTGATAAAGGCTATCGCGTCGCGCTGCACGGAAGTCGACAGCGGCGCGCGCAATATCGACAACATCCT
GTCCAAGACCCTCATGCCGGAGCTCGCTCAGCGGGTACTGGAGCGGATGGCGCAGGACAAGCCGATTCAGAGCCTGACCA
TCGACCTGGGCAGCGATGGCGACTTCGCTTACACCCTGACCTGA

Upstream 100 bases:

>100_bases
ATGTATCGCTGGGCTGGCTTGGCTGGCTCAAACGCCCCGGTGTCGACGTGGAGCCTTCCCGTTGCGCCGTTTTCCATATT
CCTTTTGATGGGGTCTCCCT

Downstream 100 bases:

>100_bases
TCGATCACCCCATAGGTAAGACGTAATGAATAAAAGACTTCAAGGCAATTGTTCCTCGAAGCCAGCCTTGGCAAGGTGCC
TGGCTGTTCTGGCAATGATG

Product: AAA ATPase, central region:Clp, N terminal:Clp, N terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 867; Mature: 867

Protein sequence:

>867_residues
MNLKSLFAKLNETSRTATESAAALCLSENHYDVEVEHLLLQLLDNNDNDLPVILRHYDVVPDRLQAQLVTALGTFKKGNT
RTPALSPHITRMIEQAWVLASIEFGQSQIRTGHLVQALLDDDALRRVVIGSAPELEKINADDLRLNMSALVEGSPETKLS
KPLANADASTGATTKGNGKTPALDQYTVNLTQSARDGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
LALRIVQGDVPSVLKGVAIHTLDLGLLQAGAGVKGEFENRLKSVIEETKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL
LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLAKMQEHHKVTVMDEALVQAVRLSN
RYITGRQLPDKAVSVLDTACARVALGQSAQPGALEDCKRHIDNLNAEITVLEQETAKGSDHARRLTALHEELQAEQETRE
SLEQQWKRELELVEKLGALSVPQSGEPDAGQIAAVRAELASVQGEQPLVHALVDGGTIGEVISGWTGIPLGKMLRDEIDT
VQSLPALLGERVLGQDHALEEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNVITINMSEYQ
EAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTS
NTGTDRIMQWCLNTEQKPTPDDIVEGLRDELNQVFKPAFLGRLTIVPYYPVQDAILERIVGLKLERIRKRFERNHQAVLR
YDEALIKAIASRCTEVDSGARNIDNILSKTLMPELAQRVLERMAQDKPIQSLTIDLGSDGDFAYTLT

Sequences:

>Translated_867_residues
MNLKSLFAKLNETSRTATESAAALCLSENHYDVEVEHLLLQLLDNNDNDLPVILRHYDVVPDRLQAQLVTALGTFKKGNT
RTPALSPHITRMIEQAWVLASIEFGQSQIRTGHLVQALLDDDALRRVVIGSAPELEKINADDLRLNMSALVEGSPETKLS
KPLANADASTGATTKGNGKTPALDQYTVNLTQSARDGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
LALRIVQGDVPSVLKGVAIHTLDLGLLQAGAGVKGEFENRLKSVIEETKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL
LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLAKMQEHHKVTVMDEALVQAVRLSN
RYITGRQLPDKAVSVLDTACARVALGQSAQPGALEDCKRHIDNLNAEITVLEQETAKGSDHARRLTALHEELQAEQETRE
SLEQQWKRELELVEKLGALSVPQSGEPDAGQIAAVRAELASVQGEQPLVHALVDGGTIGEVISGWTGIPLGKMLRDEIDT
VQSLPALLGERVLGQDHALEEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNVITINMSEYQ
EAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTS
NTGTDRIMQWCLNTEQKPTPDDIVEGLRDELNQVFKPAFLGRLTIVPYYPVQDAILERIVGLKLERIRKRFERNHQAVLR
YDEALIKAIASRCTEVDSGARNIDNILSKTLMPELAQRVLERMAQDKPIQSLTIDLGSDGDFAYTLT
>Mature_867_residues
MNLKSLFAKLNETSRTATESAAALCLSENHYDVEVEHLLLQLLDNNDNDLPVILRHYDVVPDRLQAQLVTALGTFKKGNT
RTPALSPHITRMIEQAWVLASIEFGQSQIRTGHLVQALLDDDALRRVVIGSAPELEKINADDLRLNMSALVEGSPETKLS
KPLANADASTGATTKGNGKTPALDQYTVNLTQSARDGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
LALRIVQGDVPSVLKGVAIHTLDLGLLQAGAGVKGEFENRLKSVIEETKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL
LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLAKMQEHHKVTVMDEALVQAVRLSN
RYITGRQLPDKAVSVLDTACARVALGQSAQPGALEDCKRHIDNLNAEITVLEQETAKGSDHARRLTALHEELQAEQETRE
SLEQQWKRELELVEKLGALSVPQSGEPDAGQIAAVRAELASVQGEQPLVHALVDGGTIGEVISGWTGIPLGKMLRDEIDT
VQSLPALLGERVLGQDHALEEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNVITINMSEYQ
EAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTS
NTGTDRIMQWCLNTEQKPTPDDIVEGLRDELNQVFKPAFLGRLTIVPYYPVQDAILERIVGLKLERIRKRFERNHQAVLR
YDEALIKAIASRCTEVDSGARNIDNILSKTLMPELAQRVLERMAQDKPIQSLTIDLGSDGDFAYTLT

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=295, Percent_Identity=34.9152542372881, Blast_Score=162, Evalue=2e-39,
Organism=Escherichia coli, GI1788943, Length=684, Percent_Identity=42.3976608187134, Blast_Score=522, Evalue=1e-149,
Organism=Escherichia coli, GI1787109, Length=423, Percent_Identity=37.1158392434988, Blast_Score=246, Evalue=4e-66,
Organism=Saccharomyces cerevisiae, GI6320464, Length=688, Percent_Identity=40.2616279069767, Blast_Score=463, Evalue=1e-131,
Organism=Saccharomyces cerevisiae, GI6323002, Length=785, Percent_Identity=34.7770700636943, Blast_Score=450, Evalue=1e-127,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 95215; Mature: 95215

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKSLFAKLNETSRTATESAAALCLSENHYDVEVEHLLLQLLDNNDNDLPVILRHYDVV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHCCC
PDRLQAQLVTALGTFKKGNTRTPALSPHITRMIEQAWVLASIEFGQSQIRTGHLVQALLD
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
DDALRRVVIGSAPELEKINADDLRLNMSALVEGSPETKLSKPLANADASTGATTKGNGKT
HHHHHHHHCCCCCCCCCCCCCHHEEEHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
PALDQYTVNLTQSARDGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHH
LALRIVQGDVPSVLKGVAIHTLDLGLLQAGAGVKGEFENRLKSVIEETKRSLHPIILFID
HHHEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
EAHTLIGSGGQAGQNDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKV
CHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
EEPDEDKAIHMLRGLLAKMQEHHKVTVMDEALVQAVRLSNRYITGRQLPDKAVSVLDTAC
CCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHH
ARVALGQSAQPGALEDCKRHIDNLNAEITVLEQETAKGSDHARRLTALHEELQAEQETRE
HHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
SLEQQWKRELELVEKLGALSVPQSGEPDAGQIAAVRAELASVQGEQPLVHALVDGGTIGE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCHHH
VISGWTGIPLGKMLRDEIDTVQSLPALLGERVLGQDHALEEIGKRIKISRARMEDPNKPI
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCE
GVFLLLGPSGVGKTETALALADTLYGGERNVITINMSEYQEAHTVSSLKGSPPGYVGYGE
EEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEECCC
GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTS
CCHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEC
NTGTDRIMQWCLNTEQKPTPDDIVEGLRDELNQVFKPAFLGRLTIVPYYPVQDAILERIV
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH
GLKLERIRKRFERNHQAVLRYDEALIKAIASRCTEVDSGARNIDNILSKTLMPELAQRVL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ERMAQDKPIQSLTIDLGSDGDFAYTLT
HHHHCCCCCCEEEEEECCCCCEEEEEC
>Mature Secondary Structure
MNLKSLFAKLNETSRTATESAAALCLSENHYDVEVEHLLLQLLDNNDNDLPVILRHYDVV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHCCC
PDRLQAQLVTALGTFKKGNTRTPALSPHITRMIEQAWVLASIEFGQSQIRTGHLVQALLD
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
DDALRRVVIGSAPELEKINADDLRLNMSALVEGSPETKLSKPLANADASTGATTKGNGKT
HHHHHHHHCCCCCCCCCCCCCHHEEEHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
PALDQYTVNLTQSARDGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHH
LALRIVQGDVPSVLKGVAIHTLDLGLLQAGAGVKGEFENRLKSVIEETKRSLHPIILFID
HHHEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
EAHTLIGSGGQAGQNDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKV
CHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
EEPDEDKAIHMLRGLLAKMQEHHKVTVMDEALVQAVRLSNRYITGRQLPDKAVSVLDTAC
CCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHH
ARVALGQSAQPGALEDCKRHIDNLNAEITVLEQETAKGSDHARRLTALHEELQAEQETRE
HHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
SLEQQWKRELELVEKLGALSVPQSGEPDAGQIAAVRAELASVQGEQPLVHALVDGGTIGE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCHHH
VISGWTGIPLGKMLRDEIDTVQSLPALLGERVLGQDHALEEIGKRIKISRARMEDPNKPI
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCE
GVFLLLGPSGVGKTETALALADTLYGGERNVITINMSEYQEAHTVSSLKGSPPGYVGYGE
EEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEECCC
GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTS
CCHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEC
NTGTDRIMQWCLNTEQKPTPDDIVEGLRDELNQVFKPAFLGRLTIVPYYPVQDAILERIV
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH
GLKLERIRKRFERNHQAVLRYDEALIKAIASRCTEVDSGARNIDNILSKTLMPELAQRVL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ERMAQDKPIQSLTIDLGSDGDFAYTLT
HHHHCCCCCCEEEEEECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]