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The map label for this gene is rarD [C]

Identifier: 66047922

GI number: 66047922

Start: 5567144

End: 5568031

Strand: Direct

Name: rarD [C]

Synonym: Psyr_4698

Alternate gene names: 66047922

Gene position: 5567144-5568031 (Clockwise)

Preceding gene: 66047921

Following gene: 66047924

Centisome position: 91.36

GC content: 63.29

Gene sequence:

>888_bases
ATGCAAGCTGCCAATCCACGCCGTGGGTACATTCTGGGCCTGAGTGCTTACATCATCTGGGGACTGTTCCCCATCTACTT
CAAAGCCATTGCCGCCGTTCCGGCCATCGAGATCATCATCCATCGCGCGCTCTGGTCAGCGCTGTTCGGCTCGATCGTGC
TGATGTTCTGGAAGCATCCCGGCTGGTGGCGCGACCTGCGCAACAACCCGCAACGGCTGGCCGTACTGGCGCTGAGCGGC
ACCCTGATCGCCAGCAACTGGATCATCTACGTCTGGGCGGTGAATAACGGACGCATGCTTGAAGCCAGCCTCGGGTATTA
CATCAACCCGCTGGTCAACGTGCTGCTTGGCATGTTGCTACTGGGCGAGCGCCTCAGACGCCTGCAGATGCTGGCGGTCG
CCTTCGCCGCCATTGGCGTCGCCCATCAGGTCTGGCACGTCGGCAGCCTGCCGTGGGTGTCGCTGGCGCTGCCATTGACC
TTCGCGTTCTACGGGCTGATCCGCAAACAAGCCCCGGTCGCCGCCCTGCCCGGCCTGGTCGTCGAAACCTGGATGCTGGT
GCCGCTGGCGCTGATCTGGCTGGCGATCAACCCGACGGCCGTGAGCGTCCAGCCAGAATTCTGGACCACGACTCAAGCCA
TCTGGCTCGCCGCAGCCGGCCCGGTCACGCTGGTACCGCTGGTGTGCTTCAACGCCGCCGCCCGTCATTTGCCTTTCACC
ACCCTGGGCTTTCTGCAGTACGTCGCGCCCACACTGGTCCTGCTGCTGGCCGTGCTGCTGTATGGCGAACACCTGACCAC
CAGCACCCTCATCACCTTCGCCTTCATCTGGGCCGGGCTGGCGATCTACAGTGTGGATATCTGGCTGAAATCCCGCGGCC
GTCACTGA

Upstream 100 bases:

>100_bases
CTGTGTATAACATCGAGCGCTCCAGCGTGAGTACGATCAAAACCATCAACTGCATCACCCCACAATAAAACCGGAATTTT
CTGTATTAAAGGGACGCTCC

Downstream 100 bases:

>100_bases
TCAAAAAACACACAAATACTTGCAAACCACGCCCACTGTGGCCTGCAAGAGGTTCTCCAAGGGTTATCCACAGGCAGACT
GACCTTATCTGTGCACAAGC

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MQAANPRRGYILGLSAYIIWGLFPIYFKAIAAVPAIEIIIHRALWSALFGSIVLMFWKHPGWWRDLRNNPQRLAVLALSG
TLIASNWIIYVWAVNNGRMLEASLGYYINPLVNVLLGMLLLGERLRRLQMLAVAFAAIGVAHQVWHVGSLPWVSLALPLT
FAFYGLIRKQAPVAALPGLVVETWMLVPLALIWLAINPTAVSVQPEFWTTTQAIWLAAAGPVTLVPLVCFNAAARHLPFT
TLGFLQYVAPTLVLLLAVLLYGEHLTTSTLITFAFIWAGLAIYSVDIWLKSRGRH

Sequences:

>Translated_295_residues
MQAANPRRGYILGLSAYIIWGLFPIYFKAIAAVPAIEIIIHRALWSALFGSIVLMFWKHPGWWRDLRNNPQRLAVLALSG
TLIASNWIIYVWAVNNGRMLEASLGYYINPLVNVLLGMLLLGERLRRLQMLAVAFAAIGVAHQVWHVGSLPWVSLALPLT
FAFYGLIRKQAPVAALPGLVVETWMLVPLALIWLAINPTAVSVQPEFWTTTQAIWLAAAGPVTLVPLVCFNAAARHLPFT
TLGFLQYVAPTLVLLLAVLLYGEHLTTSTLITFAFIWAGLAIYSVDIWLKSRGRH
>Mature_295_residues
MQAANPRRGYILGLSAYIIWGLFPIYFKAIAAVPAIEIIIHRALWSALFGSIVLMFWKHPGWWRDLRNNPQRLAVLALSG
TLIASNWIIYVWAVNNGRMLEASLGYYINPLVNVLLGMLLLGERLRRLQMLAVAFAAIGVAHQVWHVGSLPWVSLALPLT
FAFYGLIRKQAPVAALPGLVVETWMLVPLALIWLAINPTAVSVQPEFWTTTQAIWLAAAGPVTLVPLVCFNAAARHLPFT
TLGFLQYVAPTLVLLLAVLLYGEHLTTSTLITFAFIWAGLAIYSVDIWLKSRGRH

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=294, Percent_Identity=48.6394557823129, Blast_Score=266, Evalue=8e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32772; Mature: 32772

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAANPRRGYILGLSAYIIWGLFPIYFKAIAAVPAIEIIIHRALWSALFGSIVLMFWKHP
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GWWRDLRNNPQRLAVLALSGTLIASNWIIYVWAVNNGRMLEASLGYYINPLVNVLLGMLL
CHHHHHCCCHHHEEEEEEECEEEECCEEEEEEEECCCEEEEHHCCHHHHHHHHHHHHHHH
LGERLRRLQMLAVAFAAIGVAHQVWHVGSLPWVSLALPLTFAFYGLIRKQAPVAALPGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCHHH
VETWMLVPLALIWLAINPTAVSVQPEFWTTTQAIWLAAAGPVTLVPLVCFNAAARHLPFT
HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCHH
TLGFLQYVAPTLVLLLAVLLYGEHLTTSTLITFAFIWAGLAIYSVDIWLKSRGRH
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC
>Mature Secondary Structure
MQAANPRRGYILGLSAYIIWGLFPIYFKAIAAVPAIEIIIHRALWSALFGSIVLMFWKHP
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GWWRDLRNNPQRLAVLALSGTLIASNWIIYVWAVNNGRMLEASLGYYINPLVNVLLGMLL
CHHHHHCCCHHHEEEEEEECEEEECCEEEEEEEECCCEEEEHHCCHHHHHHHHHHHHHHH
LGERLRRLQMLAVAFAAIGVAHQVWHVGSLPWVSLALPLTFAFYGLIRKQAPVAALPGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCHHH
VETWMLVPLALIWLAINPTAVSVQPEFWTTTQAIWLAAAGPVTLVPLVCFNAAARHLPFT
HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCHH
TLGFLQYVAPTLVLLLAVLLYGEHLTTSTLITFAFIWAGLAIYSVDIWLKSRGRH
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]