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The map label for this gene is ymfK [C]

Identifier: 66047830

GI number: 66047830

Start: 5460691

End: 5461380

Strand: Direct

Name: ymfK [C]

Synonym: Psyr_4603

Alternate gene names: 66047830

Gene position: 5460691-5461380 (Clockwise)

Preceding gene: 66047804

Following gene: 66047831

Centisome position: 89.61

GC content: 58.55

Gene sequence:

>690_bases
ATGTATATTGCTCAACACCCTACAGCCTGTATGATTCGACGCATGAACAGAAAATGGTATGAAGTCGCAAGACAGGTCAT
GGAAACCCAGGAAATCAGCCAGGAAGAAATGGCTGAGCGGATGGGCGTGACGCCCGGCGCGGTAGGGCATTGGCTGAACG
GCAAGCGTGAACCGAAGATCGAGGTCATCAATCGATTTCTGACCGAGCTCGGCCTGCCGATTCTCACCACCTCCATCCCG
GCCAGCGAACCCGGCATGCACAACGTGGAGCCCACGGTGCAGCCTTCGCGTTTCTATCGCTATCCGGTCATCAGCTGGGT
CGAGGCCGGTGGCTGGAGTGAGGCCGTCGAGCCCTACCCTGCCGGCTATTCGGACACTTTCGAGATCAGCGACTATAAAG
CCAAGGGCAGAGCTTTCTGGCTGGTAGTGCGTGGCGACTCGATGACCGCGCCCGCAGGGCAGAGCATTCCCGAAGGCATG
TTGATTCTGGTCGACACCGGAATCGAGCCCACTGCCGGCAAGCTGGTCATCGCCAAACTGCCGGAAAGCAACGAGGCCAC
CTTCAAAAAGCTGGTCGAAGACGCCGGACGCTATTTTCTCAAGCCGCTGAACCCCGCCTACCCGACCCTTGCGGTGACCG
AGGAGTGCAAACTGATCGGCGTCATCAGGCAGATGACCATGCGTCTCTGA

Upstream 100 bases:

>100_bases
TGTAGGACCTTTCTGAAAAGCTGTGCAGCGTCTTTCGCTACACAGAACCGAGGCCTTACAATACATTTTGTATTTTTATG
ACACAACGAAGCATTACATT

Downstream 100 bases:

>100_bases
AGCCCGGCACGCCCCGCCCAAGCCCCGATAATCGGGGCTTTTTCATGCGCCACTGTTTCAGTCCGGGCAGGTGTCCGTGT
AGGAAACATTTGTAGCTTGC

Product: peptidase

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MYIAQHPTACMIRRMNRKWYEVARQVMETQEISQEEMAERMGVTPGAVGHWLNGKREPKIEVINRFLTELGLPILTTSIP
ASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISDYKAKGRAFWLVVRGDSMTAPAGQSIPEGM
LILVDTGIEPTAGKLVIAKLPESNEATFKKLVEDAGRYFLKPLNPAYPTLAVTEECKLIGVIRQMTMRL

Sequences:

>Translated_229_residues
MYIAQHPTACMIRRMNRKWYEVARQVMETQEISQEEMAERMGVTPGAVGHWLNGKREPKIEVINRFLTELGLPILTTSIP
ASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISDYKAKGRAFWLVVRGDSMTAPAGQSIPEGM
LILVDTGIEPTAGKLVIAKLPESNEATFKKLVEDAGRYFLKPLNPAYPTLAVTEECKLIGVIRQMTMRL
>Mature_229_residues
MYIAQHPTACMIRRMNRKWYEVARQVMETQEISQEEMAERMGVTPGAVGHWLNGKREPKIEVINRFLTELGLPILTTSIP
ASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVEPYPAGYSDTFEISDYKAKGRAFWLVVRGDSMTAPAGQSIPEGM
LILVDTGIEPTAGKLVIAKLPESNEATFKKLVEDAGRYFLKPLNPAYPTLAVTEECKLIGVIRQMTMRL

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787391, Length=130, Percent_Identity=33.8461538461538, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 25692; Mature: 25692

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIAQHPTACMIRRMNRKWYEVARQVMETQEISQEEMAERMGVTPGAVGHWLNGKREPKI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHCCCCCCCHH
EVINRFLTELGLPILTTSIPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVEPYP
HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHHHCCCCCCCCCCCC
AGYSDTFEISDYKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKL
CCCCCCEECCCEECCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC
PESNEATFKKLVEDAGRYFLKPLNPAYPTLAVTEECKLIGVIRQMTMRL
CCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYIAQHPTACMIRRMNRKWYEVARQVMETQEISQEEMAERMGVTPGAVGHWLNGKREPKI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHCCCCCCCHH
EVINRFLTELGLPILTTSIPASEPGMHNVEPTVQPSRFYRYPVISWVEAGGWSEAVEPYP
HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHHHCCCCCCCCCCCC
AGYSDTFEISDYKAKGRAFWLVVRGDSMTAPAGQSIPEGMLILVDTGIEPTAGKLVIAKL
CCCCCCEECCCEECCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC
PESNEATFKKLVEDAGRYFLKPLNPAYPTLAVTEECKLIGVIRQMTMRL
CCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]