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The map label for this gene is 66047797

Identifier: 66047797

GI number: 66047797

Start: 5434556

End: 5434984

Strand: Direct

Name: 66047797

Synonym: Psyr_4570

Alternate gene names: NA

Gene position: 5434556-5434984 (Clockwise)

Preceding gene: 66047794

Following gene: 66047798

Centisome position: 89.18

GC content: 53.38

Gene sequence:

>429_bases
ATGCTCTATCTATGGATAAAAGCGCTTCATGTCATTTCAATGGTCTGCTGGTTTGCAGCCCTGTTCTATCTGCCGAGACT
GTTTGTCTATCACTCGATGAGTGAGGACACGGTCAGCCGCGAGCGTTTCATCGTCATGGAGCGCAAGCTGTACCGTGGCA
TTATGACCCCGGCAATGATTGCAACGCTGGTCTTCGGCGGCTGGCTGATCAGCTTCGACCCCAGCGGTTATTTCAGTCAG
GGCTGGATGCACGCCAAGCTCGCACTGGTTGTCCTGCTGATCGGCTATCACCACGTCTGCGGCGCACAGATGAAACGCTT
TGCCCGTGGTGAAAATGGCCGCAGCCATGTGTTTTATCGCTGGTTCAATGAAATCCCGGTACTGATCCTGATCGCCATCG
TCATCCTGGTTATCGTCAAACCCTTCTGA

Upstream 100 bases:

>100_bases
CGATAATAGGAGCCTATCGCCTCTGCGACAACCGACAACGTGACGTATGGGCGCACAAGACACTACTATTCGGCCACCGT
GAACCTGGGAATAATCAAAA

Downstream 100 bases:

>100_bases
CTCCAATCATCAGTAACGCGACAGGGCGCCCTGTCTCAGACAGGCGCCCGGCATTGTTTTCCATTTAAAGACAAGGAAGC
CCCGTATGGCCGATTCACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MLYLWIKALHVISMVCWFAALFYLPRLFVYHSMSEDTVSRERFIVMERKLYRGIMTPAMIATLVFGGWLISFDPSGYFSQ
GWMHAKLALVVLLIGYHHVCGAQMKRFARGENGRSHVFYRWFNEIPVLILIAIVILVIVKPF

Sequences:

>Translated_142_residues
MLYLWIKALHVISMVCWFAALFYLPRLFVYHSMSEDTVSRERFIVMERKLYRGIMTPAMIATLVFGGWLISFDPSGYFSQ
GWMHAKLALVVLLIGYHHVCGAQMKRFARGENGRSHVFYRWFNEIPVLILIAIVILVIVKPF
>Mature_142_residues
MLYLWIKALHVISMVCWFAALFYLPRLFVYHSMSEDTVSRERFIVMERKLYRGIMTPAMIATLVFGGWLISFDPSGYFSQ
GWMHAKLALVVLLIGYHHVCGAQMKRFARGENGRSHVFYRWFNEIPVLILIAIVILVIVKPF

Specific function: Unknown

COG id: COG1981

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0093 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014351
- InterPro:   IPR008457
- InterPro:   IPR005265 [H]

Pfam domain/function: PF05425 CopD; PF03653 UPF0093 [H]

EC number: NA

Molecular weight: Translated: 16575; Mature: 16575

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYLWIKALHVISMVCWFAALFYLPRLFVYHSMSEDTVSRERFIVMERKLYRGIMTPAMI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHH
ATLVFGGWLISFDPSGYFSQGWMHAKLALVVLLIGYHHVCGAQMKRFARGENGRSHVFYR
HHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
WFNEIPVLILIAIVILVIVKPF
HHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYLWIKALHVISMVCWFAALFYLPRLFVYHSMSEDTVSRERFIVMERKLYRGIMTPAMI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHH
ATLVFGGWLISFDPSGYFSQGWMHAKLALVVLLIGYHHVCGAQMKRFARGENGRSHVFYR
HHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
WFNEIPVLILIAIVILVIVKPF
HHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]