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The map label for this gene is yebA [H]

Identifier: 66047793

GI number: 66047793

Start: 5430185

End: 5431612

Strand: Direct

Name: yebA [H]

Synonym: Psyr_4566

Alternate gene names: 66047793

Gene position: 5430185-5431612 (Clockwise)

Preceding gene: 66047747

Following gene: 66047794

Centisome position: 89.11

GC content: 58.12

Gene sequence:

>1428_bases
ATGAAAGACACACCGCCTAAAGCGCCCCCGCTTTATCCGAAGAGTCACCTGCTCGCTGCAAGCGGCATCGCCGCGTTGTT
GAGCCTGGCTCTCCTGGTTTTTCCATCCAGCGATGTCGAAGCCAAACGAACCAACATTCCCCTCGATCTGGAGGCACCGG
ATCAGGACGTACAAGACCAAGACGCTCAACAAGCCACTCAAGCCACACCTGAAACCACCGAATCGCCATTTGCCCAGATC
GACAACGCCGACGATCAGGCTCAAGACACCGCCAACGCACAGCCTCAGGCAGAGACTACCGCGCCAGCCGCTGCGAAAGA
TCCTGCCCACAGGGAGGTCACCGTCAGCAAGGGCGACACGCTGTCGACCCTGTTCGAAAAAGTCGGGCTACCCGCCGCCA
CCGTTCATGAAGTACTGGCCAGCGACAAGCAGGCCAAGCAGTTCAGCAAGCTGCAGAACGGACAGACGCTGCAGTTCGAG
CTGACGCCGGATGGCCAGCTCAAGCAATTGCACACAAAACTCAGCGAAGTCGAGTCCATCAGCCTGTCGAAGACAGCAAC
TGGTGGTTACGCATTCAATCGCGAGATCAGCAAGCCCAACGTGCGTAACGCCTACGTACACGGGGTGATCAACAGCTCCC
TGTCGCAGTCCGCGCAACGTGCCGGCCTGACTCATAGCATGACGATGGACATGGCCAACATCTTTGGCTACGACATCGAC
TTCGCGCAGGACATCCGCAAGGGTGACGAATTCGATGTGGTATACGAACAGAAAGTGGTCAACGGCAAGAGCGTAGGCAC
AGGGAATATCCTGTCCGCCCGCTTCACTAACCGGGGCAAGACCTACACCGCCGTTCGCTACACCAACAAGCAGGGCAATA
CCAATTACTACACGGCTGACGGCAACAGCATGCGCAAGGCCTTCATCCGTACCCCGGTCGACTTCGCCCGCATCAGCTCG
ATGTTCTCGATGGGCCGCAAGCACCCGATCCTCAACAAGATCCGCGCTCACAAAGGTGTGGACTATGCAGCGCCACGCGG
TACGCCGATCAAGGCCACCGGCGACGGCAAGGTCCTGCTCGCCGGCCGCCGTGGCGGATACGGCAATACCGTCATCATTC
AGCACGGCGACACCTACCGTACGCTGTATGGTCACATGCAGGGCTTCGCTAAAGGCATACAGACCGGCGGCACTGTCAAG
CAAGGCCAGGTTATCGGCTATATTGGAACTACCGGGCTGTCCACAGGCCCGCACTTGCACTACGAGTTTCAGGTCAATGG
CGTTCACGTAGACCCGTTGGGCCAAAAGCTTCCGATGGCGGATCCGATCGCCAAATCCGAAAAACAGCGGTTCATGCAGC
AAAGCCAGCCGTTGATGGCCCGCATGGATCAGGAAAAAGCCACCACGCTGGCCTCGAATAAAAGGTAA

Upstream 100 bases:

>100_bases
GGTTGCTTCGAGCAGGTTTTGGTTATATTTTATACAGTTATTTCATCTTCATCATGTCATTCATCTTTTCCATTTCACCT
TTTTCAAAGTCAAATTACCT

Downstream 100 bases:

>100_bases
TCCATGGACTTCTTCTATATAGGTGTGATGTCCGGCAGCAGTCTCGATGGGATTGATATCGCCCTTTTGAAGCAGGATGA
CCGATCAAGGCTTCTGGCTA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MKDTPPKAPPLYPKSHLLAASGIAALLSLALLVFPSSDVEAKRTNIPLDLEAPDQDVQDQDAQQATQATPETTESPFAQI
DNADDQAQDTANAQPQAETTAPAAAKDPAHREVTVSKGDTLSTLFEKVGLPAATVHEVLASDKQAKQFSKLQNGQTLQFE
LTPDGQLKQLHTKLSEVESISLSKTATGGYAFNREISKPNVRNAYVHGVINSSLSQSAQRAGLTHSMTMDMANIFGYDID
FAQDIRKGDEFDVVYEQKVVNGKSVGTGNILSARFTNRGKTYTAVRYTNKQGNTNYYTADGNSMRKAFIRTPVDFARISS
MFSMGRKHPILNKIRAHKGVDYAAPRGTPIKATGDGKVLLAGRRGGYGNTVIIQHGDTYRTLYGHMQGFAKGIQTGGTVK
QGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKSEKQRFMQQSQPLMARMDQEKATTLASNKR

Sequences:

>Translated_475_residues
MKDTPPKAPPLYPKSHLLAASGIAALLSLALLVFPSSDVEAKRTNIPLDLEAPDQDVQDQDAQQATQATPETTESPFAQI
DNADDQAQDTANAQPQAETTAPAAAKDPAHREVTVSKGDTLSTLFEKVGLPAATVHEVLASDKQAKQFSKLQNGQTLQFE
LTPDGQLKQLHTKLSEVESISLSKTATGGYAFNREISKPNVRNAYVHGVINSSLSQSAQRAGLTHSMTMDMANIFGYDID
FAQDIRKGDEFDVVYEQKVVNGKSVGTGNILSARFTNRGKTYTAVRYTNKQGNTNYYTADGNSMRKAFIRTPVDFARISS
MFSMGRKHPILNKIRAHKGVDYAAPRGTPIKATGDGKVLLAGRRGGYGNTVIIQHGDTYRTLYGHMQGFAKGIQTGGTVK
QGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKSEKQRFMQQSQPLMARMDQEKATTLASNKR
>Mature_475_residues
MKDTPPKAPPLYPKSHLLAASGIAALLSLALLVFPSSDVEAKRTNIPLDLEAPDQDVQDQDAQQATQATPETTESPFAQI
DNADDQAQDTANAQPQAETTAPAAAKDPAHREVTVSKGDTLSTLFEKVGLPAATVHEVLASDKQAKQFSKLQNGQTLQFE
LTPDGQLKQLHTKLSEVESISLSKTATGGYAFNREISKPNVRNAYVHGVINSSLSQSAQRAGLTHSMTMDMANIFGYDID
FAQDIRKGDEFDVVYEQKVVNGKSVGTGNILSARFTNRGKTYTAVRYTNKQGNTNYYTADGNSMRKAFIRTPVDFARISS
MFSMGRKHPILNKIRAHKGVDYAAPRGTPIKATGDGKVLLAGRRGGYGNTVIIQHGDTYRTLYGHMQGFAKGIQTGGTVK
QGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKSEKQRFMQQSQPLMARMDQEKATTLASNKR

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=380, Percent_Identity=33.9473684210526, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI87082174, Length=98, Percent_Identity=39.7959183673469, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87082297, Length=95, Percent_Identity=36.8421052631579, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789099, Length=98, Percent_Identity=40.8163265306122, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 51552; Mature: 51552

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDTPPKAPPLYPKSHLLAASGIAALLSLALLVFPSSDVEAKRTNIPLDLEAPDQDVQDQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEECCCCCCCCCHH
DAQQATQATPETTESPFAQIDNADDQAQDTANAQPQAETTAPAAAKDPAHREVTVSKGDT
HHHHHHHCCCCCCCCCHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCH
LSTLFEKVGLPAATVHEVLASDKQAKQFSKLQNGQTLQFELTPDGQLKQLHTKLSEVESI
HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHC
SLSKTATGGYAFNREISKPNVRNAYVHGVINSSLSQSAQRAGLTHSMTMDMANIFGYDID
CCCCCCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
FAQDIRKGDEFDVVYEQKVVNGKSVGTGNILSARFTNRGKTYTAVRYTNKQGNTNYYTAD
HHHHHHCCCCEEEEEHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCEEEECC
GNSMRKAFIRTPVDFARISSMFSMGRKHPILNKIRAHKGVDYAAPRGTPIKATGDGKVLL
CCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEE
AGRRGGYGNTVIIQHGDTYRTLYGHMQGFAKGIQTGGTVKQGQVIGYIGTTGLSTGPHLH
EECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCEEEEEEECCCCCCCCEEE
YEFQVNGVHVDPLGQKLPMADPIAKSEKQRFMQQSQPLMARMDQEKATTLASNKR
EEEEECCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKDTPPKAPPLYPKSHLLAASGIAALLSLALLVFPSSDVEAKRTNIPLDLEAPDQDVQDQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEECCCCCCCCCHH
DAQQATQATPETTESPFAQIDNADDQAQDTANAQPQAETTAPAAAKDPAHREVTVSKGDT
HHHHHHHCCCCCCCCCHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCH
LSTLFEKVGLPAATVHEVLASDKQAKQFSKLQNGQTLQFELTPDGQLKQLHTKLSEVESI
HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHC
SLSKTATGGYAFNREISKPNVRNAYVHGVINSSLSQSAQRAGLTHSMTMDMANIFGYDID
CCCCCCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
FAQDIRKGDEFDVVYEQKVVNGKSVGTGNILSARFTNRGKTYTAVRYTNKQGNTNYYTAD
HHHHHHCCCCEEEEEHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCEEEECC
GNSMRKAFIRTPVDFARISSMFSMGRKHPILNKIRAHKGVDYAAPRGTPIKATGDGKVLL
CCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEE
AGRRGGYGNTVIIQHGDTYRTLYGHMQGFAKGIQTGGTVKQGQVIGYIGTTGLSTGPHLH
EECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCEEEEEEECCCCCCCCEEE
YEFQVNGVHVDPLGQKLPMADPIAKSEKQRFMQQSQPLMARMDQEKATTLASNKR
EEEEECCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]