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The map label for this gene is yhdW [H]

Identifier: 66047733

GI number: 66047733

Start: 5370347

End: 5371108

Strand: Direct

Name: yhdW [H]

Synonym: Psyr_4506

Alternate gene names: 66047733

Gene position: 5370347-5371108 (Clockwise)

Preceding gene: 66047732

Following gene: 66047734

Centisome position: 88.13

GC content: 60.37

Gene sequence:

>762_bases
ATGCTCAAACCTGCTCCCCTCGTCCGCTCGCCCCTGATTGCCCATCGCGGTGCCAAGGCTTACGTGCCGGAAAACACTCT
GCTGGCCCTGGAAAAAGCTGCCGAATGCGGCGCCGAGTGGGTCGAGATCGACGTGAAGCTGACCCGCGATGGCCAGCCTG
TCGTGATTCATGACGACTTGCTGGACCGCACCACCAACGGGCGCGGCGCCGTCGTGCTGCATGATCTGAAAGCTATCCGC
ACACTGGACGCGGGCAGCTGGTTCGCGCCTGAATTCGCCGGTTTGCAGGTCCCGACCTTTGAAGAGATCGTGGCCTGTGC
GCTGCGCCTCAACCTGGGTCTGCAGGTCGAACTCAAGCCGACCATTGGCGACGATGTCGAGACGGCGGAAGTGGTGATGC
CGATTCTCAAAAACCTGTGGCCCGCCGACAACGACCGGTTGTTCGTCTCCAGCTTTTCGGTGCGCTCGCTAACGGCCGCC
CGACGCTTATGGAACGACGTACCACTGGCTATTGCCTCGGTGGTGGCGCCTGCCGACCCGGTCGCGCTGTTGGCCGAATA
TGACTGCCGAATACTTCACGTACTTGACGATATGCTCGATGACCATCACCTTGTTCGCCTGAAAAGCAGCGGCGTCGAAT
TCGCCGTGGCTACCATCAACAGCCCGAAACGTGCGCGCTACCTGCTAGAACATGGCGCACAGTCGATTCTCAGTGATTAC
CCGGACTTGTTGAACCTGCCGAACGGAGGCTGTCTGCAATGA

Upstream 100 bases:

>100_bases
CCAGGTTCGACTGGCGATCAATTCCACGCCCTTGCTGTTCGATATCGAGACCGGCCAGCGCCAGCTCGTGACCTTTTCCC
ACACCACCAAGTGACCCGCC

Downstream 100 bases:

>100_bases
ACAACCGACTCAGCGTCGCCATGCACGCCGTAGAACAGGCCACTGGCCTGGCCATGGCGTATTTTAACGACCGCCACACC
CTCGACATCACCACCAAAAG

Product: glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MLKPAPLVRSPLIAHRGAKAYVPENTLLALEKAAECGAEWVEIDVKLTRDGQPVVIHDDLLDRTTNGRGAVVLHDLKAIR
TLDAGSWFAPEFAGLQVPTFEEIVACALRLNLGLQVELKPTIGDDVETAEVVMPILKNLWPADNDRLFVSSFSVRSLTAA
RRLWNDVPLAIASVVAPADPVALLAEYDCRILHVLDDMLDDHHLVRLKSSGVEFAVATINSPKRARYLLEHGAQSILSDY
PDLLNLPNGGCLQ

Sequences:

>Translated_253_residues
MLKPAPLVRSPLIAHRGAKAYVPENTLLALEKAAECGAEWVEIDVKLTRDGQPVVIHDDLLDRTTNGRGAVVLHDLKAIR
TLDAGSWFAPEFAGLQVPTFEEIVACALRLNLGLQVELKPTIGDDVETAEVVMPILKNLWPADNDRLFVSSFSVRSLTAA
RRLWNDVPLAIASVVAPADPVALLAEYDCRILHVLDDMLDDHHLVRLKSSGVEFAVATINSPKRARYLLEHGAQSILSDY
PDLLNLPNGGCLQ
>Mature_253_residues
MLKPAPLVRSPLIAHRGAKAYVPENTLLALEKAAECGAEWVEIDVKLTRDGQPVVIHDDLLDRTTNGRGAVVLHDLKAIR
TLDAGSWFAPEFAGLQVPTFEEIVACALRLNLGLQVELKPTIGDDVETAEVVMPILKNLWPADNDRLFVSSFSVRSLTAA
RRLWNDVPLAIASVVAPADPVALLAEYDCRILHVLDDMLDDHHLVRLKSSGVEFAVATINSPKRARYLLEHGAQSILSDY
PDLLNLPNGGCLQ

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=116, Percent_Identity=40.5172413793103, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI284055245, Length=85, Percent_Identity=43.5294117647059, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI284055240, Length=85, Percent_Identity=43.5294117647059, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI284055242, Length=85, Percent_Identity=43.5294117647059, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI21361649, Length=85, Percent_Identity=43.5294117647059, Blast_Score=71, Evalue=8e-13,
Organism=Escherichia coli, GI1789858, Length=237, Percent_Identity=31.2236286919831, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27675; Mature: 27675

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKPAPLVRSPLIAHRGAKAYVPENTLLALEKAAECGAEWVEIDVKLTRDGQPVVIHDDL
CCCCCCCHHCCHHHHCCCCEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECHH
LDRTTNGRGAVVLHDLKAIRTLDAGSWFAPEFAGLQVPTFEEIVACALRLNLGLQVELKP
HHCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
TIGDDVETAEVVMPILKNLWPADNDRLFVSSFSVRSLTAARRLWNDVPLAIASVVAPADP
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHCCCCH
VALLAEYDCRILHVLDDMLDDHHLVRLKSSGVEFAVATINSPKRARYLLEHGAQSILSDY
HHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
PDLLNLPNGGCLQ
HHHHCCCCCCCCC
>Mature Secondary Structure
MLKPAPLVRSPLIAHRGAKAYVPENTLLALEKAAECGAEWVEIDVKLTRDGQPVVIHDDL
CCCCCCCHHCCHHHHCCCCEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECHH
LDRTTNGRGAVVLHDLKAIRTLDAGSWFAPEFAGLQVPTFEEIVACALRLNLGLQVELKP
HHCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
TIGDDVETAEVVMPILKNLWPADNDRLFVSSFSVRSLTAARRLWNDVPLAIASVVAPADP
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHCCCCH
VALLAEYDCRILHVLDDMLDDHHLVRLKSSGVEFAVATINSPKRARYLLEHGAQSILSDY
HHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
PDLLNLPNGGCLQ
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]