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The map label for this gene is exbD1 [H]

Identifier: 66047725

GI number: 66047725

Start: 5360832

End: 5361257

Strand: Direct

Name: exbD1 [H]

Synonym: Psyr_4498

Alternate gene names: 66047725

Gene position: 5360832-5361257 (Clockwise)

Preceding gene: 66047724

Following gene: 66047726

Centisome position: 87.97

GC content: 62.91

Gene sequence:

>426_bases
ATGGCCAGTGGATTGCTGGGCGAGGATGAACTGGAAGAGGACGGCTTCAACCCCGAGATCAATACCACGCCACTGGTGGA
CGTGATGCTGGTGCTGTTGGTGATCTTCATCATCACCGTGCCGGCCATCCAGCACACGGTGAAGATTGACCTGCCCAAGG
CCGCCGCGCAGCAGGACAACAAACCGCCGCCGTCCGTGGATCTGGCACTGGACAACGAAGGCCACCTGCATTGGGACGAC
CGCGACATCGGCGACAGCGACTTGCCGGCACTGATCGCCGAGGCCGCCGCGCGTCAGCCGGTACCGGAGTTGCACCTGCG
CGCCGAACGCAACACCCCGTATGAAAAGGTGGTGCAGGTAATGGCCGCGGCGCAGTCCGGTGGCCTGGACAAGATCGGCT
TCGTGACCAAGGCCGTTACGCCTTAA

Upstream 100 bases:

>100_bases
CCTTCGAACTGCACGACCTGCTGGTGATCGGCGCCCGTGCGACCCCTCGCGGCGGGCAGCCTGCGCGCAGCACGTTCAAC
GCCCAGGCGGAGTTCGTCTG

Downstream 100 bases:

>100_bases
CAACCGCGCCGCCTTCCTTCACCCCCCTTGGCCGGCTGTTACAGCCGGCCACGGCGAAGTGCGCGCGACAGAAATCAACC
AGGCCGTGAACGGCCGTTTT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MASGLLGEDELEEDGFNPEINTTPLVDVMLVLLVIFIITVPAIQHTVKIDLPKAAAQQDNKPPPSVDLALDNEGHLHWDD
RDIGDSDLPALIAEAAARQPVPELHLRAERNTPYEKVVQVMAAAQSGGLDKIGFVTKAVTP

Sequences:

>Translated_141_residues
MASGLLGEDELEEDGFNPEINTTPLVDVMLVLLVIFIITVPAIQHTVKIDLPKAAAQQDNKPPPSVDLALDNEGHLHWDD
RDIGDSDLPALIAEAAARQPVPELHLRAERNTPYEKVVQVMAAAQSGGLDKIGFVTKAVTP
>Mature_140_residues
ASGLLGEDELEEDGFNPEINTTPLVDVMLVLLVIFIITVPAIQHTVKIDLPKAAAQQDNKPPPSVDLALDNEGHLHWDDR
DIGDSDLPALIAEAAARQPVPELHLRAERNTPYEKVVQVMAAAQSGGLDKIGFVTKAVTP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=127, Percent_Identity=27.5590551181102, Blast_Score=63, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15204; Mature: 15073

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGLLGEDELEEDGFNPEINTTPLVDVMLVLLVIFIITVPAIQHTVKIDLPKAAAQQDN
CCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHCCC
KPPPSVDLALDNEGHLHWDDRDIGDSDLPALIAEAAARQPVPELHLRAERNTPYEKVVQV
CCCCCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHEECCCCCCHHHHHHH
MAAAQSGGLDKIGFVTKAVTP
HHHHHCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
ASGLLGEDELEEDGFNPEINTTPLVDVMLVLLVIFIITVPAIQHTVKIDLPKAAAQQDN
CCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHCCC
KPPPSVDLALDNEGHLHWDDRDIGDSDLPALIAEAAARQPVPELHLRAERNTPYEKVVQV
CCCCCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHEECCCCCCHHHHHHH
MAAAQSGGLDKIGFVTKAVTP
HHHHHCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]