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The map label for this gene is deoC

Identifier: 66047718

GI number: 66047718

Start: 5352994

End: 5353674

Strand: Direct

Name: deoC

Synonym: Psyr_4491

Alternate gene names: 66047718

Gene position: 5352994-5353674 (Clockwise)

Preceding gene: 66047716

Following gene: 66047722

Centisome position: 87.84

GC content: 65.49

Gene sequence:

>681_bases
ATGAATTCGCTCGAACCCGCTGCACTGGCCCAGGCCATCGATCACACCTTGTTGGCGGCGGATGCCAGCCGAGAGCAGAT
TGCCACGCTTTGCGCAGAAGCCCGGGAACACGGCTTCTACTCGGTGTGCGTGAACTCCAGCCAGGTGCCTTTTGCCGCCC
GACAACTGGCCGGGTCTGCCGTGAAGGTCTGTGCGGTGGTGGGCTTTCCGCTGGGCGCCGGGCTGAGTGCCAGCAAGGCG
TCGGAAGCAGCCCTGACGATCGCCGCCGGGGCTCAGGAAATCGACATGGTGCTGAACATCGGCTGGCTCAAGGACGGTCT
GTTCGATGAGGTCCGCGACGATATCGCCGCGGTGCTGCAAGCCTGTGGCAAGGTGCCGCTCAAGGTGATCCTGGAAACCT
GCCTGCTCGATGAGGCGCAGAAGGTGCGCGCCTGCGAGATCTGCCGCGAGCTGGGCGTGGCATTCGTCAAGACCTCCACT
GGCTTCAGCCGCAGCGGCGCGACGCTCGAGGATGTGGCGCTGATGCGCCGTGTGGTAGGCCCTGACATCGGCGTCAAGGC
GTCTGGCGGGGTGCGTGACGTGGCCACGGCCAGAGCGATGATCGAAGCTGGCGCAACGCGCCTGGGCACCAGTTCCGGGA
TTGCGATCGTGACCGGCGCAGGTACGGGGGCGGGTTATTGA

Upstream 100 bases:

>100_bases
CGGCAATCCGTTGGTGGGGTCACTAGAGTAACACCAAGTGTTAATTTTATAACTTACGGGTATCCACCCAAGTATTTTTA
CCGATGACAGGAATCCCTTG

Downstream 100 bases:

>100_bases
GTCTGCGGGCTTTGACATCAAAGCCCGCTGCACTTAGCTCAGGTCGATCACACCGGTCATGGCCGTGAAATGGCTTTGCT
TGTGCTGGACCTTGTCGAGA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNSLEPAALAQAIDHTLLAADASREQIATLCAEAREHGFYSVCVNSSQVPFAARQLAGSAVKVCAVVGFPLGAGLSASKA
SEAALTIAAGAQEIDMVLNIGWLKDGLFDEVRDDIAAVLQACGKVPLKVILETCLLDEAQKVRACEICRELGVAFVKTST
GFSRSGATLEDVALMRRVVGPDIGVKASGGVRDVATARAMIEAGATRLGTSSGIAIVTGAGTGAGY

Sequences:

>Translated_226_residues
MNSLEPAALAQAIDHTLLAADASREQIATLCAEAREHGFYSVCVNSSQVPFAARQLAGSAVKVCAVVGFPLGAGLSASKA
SEAALTIAAGAQEIDMVLNIGWLKDGLFDEVRDDIAAVLQACGKVPLKVILETCLLDEAQKVRACEICRELGVAFVKTST
GFSRSGATLEDVALMRRVVGPDIGVKASGGVRDVATARAMIEAGATRLGTSSGIAIVTGAGTGAGY
>Mature_226_residues
MNSLEPAALAQAIDHTLLAADASREQIATLCAEAREHGFYSVCVNSSQVPFAARQLAGSAVKVCAVVGFPLGAGLSASKA
SEAALTIAAGAQEIDMVLNIGWLKDGLFDEVRDDIAAVLQACGKVPLKVILETCLLDEAQKVRACEICRELGVAFVKTST
GFSRSGATLEDVALMRRVVGPDIGVKASGGVRDVATARAMIEAGATRLGTSSGIAIVTGAGTGAGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=224, Percent_Identity=30.8035714285714, Blast_Score=72, Evalue=3e-13,
Organism=Escherichia coli, GI1790841, Length=218, Percent_Identity=30.7339449541284, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17533015, Length=218, Percent_Identity=31.1926605504587, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_PSEU2 (Q4ZMV1)

Other databases:

- EMBL:   CP000075
- RefSeq:   YP_237559.1
- ProteinModelPortal:   Q4ZMV1
- SMR:   Q4ZMV1
- STRING:   Q4ZMV1
- GeneID:   3370031
- GenomeReviews:   CP000075_GR
- KEGG:   psb:Psyr_4491
- NMPDR:   fig|205918.4.peg.4926
- eggNOG:   COG0274
- HOGENOM:   HBG636421
- OMA:   GANTPEV
- ProtClustDB:   PRK00507
- BioCyc:   PSYR205918:PSYR_4491-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 23094; Mature: 23094

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: ACT_SITE 157-157 ACT_SITE 186-186

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLEPAALAQAIDHTLLAADASREQIATLCAEAREHGFYSVCVNSSQVPFAARQLAGSA
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHCCHH
VKVCAVVGFPLGAGLSASKASEAALTIAAGAQEIDMVLNIGWLKDGLFDEVRDDIAAVLQ
HHHHHHHCCCCCCCCCCCCCCHHEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ACGKVPLKVILETCLLDEAQKVRACEICRELGVAFVKTSTGFSRSGATLEDVALMRRVVG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHC
PDIGVKASGGVRDVATARAMIEAGATRLGTSSGIAIVTGAGTGAGY
CCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MNSLEPAALAQAIDHTLLAADASREQIATLCAEAREHGFYSVCVNSSQVPFAARQLAGSA
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHCCHH
VKVCAVVGFPLGAGLSASKASEAALTIAAGAQEIDMVLNIGWLKDGLFDEVRDDIAAVLQ
HHHHHHHCCCCCCCCCCCCCCHHEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ACGKVPLKVILETCLLDEAQKVRACEICRELGVAFVKTSTGFSRSGATLEDVALMRRVVG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHC
PDIGVKASGGVRDVATARAMIEAGATRLGTSSGIAIVTGAGTGAGY
CCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA