BacMap

Definition	Pseudomonas syringae pv. syringae B728a, complete genome.
Accession	NC_007005
Length	6,093,698

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The map label for this gene is cbpA [H]

Identifier: 66047667

GI number: 66047667

Start: 5306648

End: 5307592

Strand: Reverse

Name: cbpA [H]

Synonym: Psyr_4440

Alternate gene names: 66047667

Gene position: 5307592-5306648 (Counterclockwise)

Preceding gene: 66047669

Following gene: 66047665

Centisome position: 87.1

GC content: 62.01

Gene sequence:

>945_bases
ATGGATTTCAAAGACTACTACAAGATACTTGCCGTGGAGCCGACTGCGGACGACAAGGCGATCAAGACCGCCTATCGCAA
ACTCGCGCGCAAGTATCATCCGGACGTCAGCAAGGAGGCAGGCGCCGAAGACAAGTTCAAGGAAGCTTCCGAAGCCTATG
AGGTACTCAGCAGCCCTGAAAAGCGCGCCGAGTATGATGAGCTGCGCAAATACGGTCGTCAGGGCCGCCCGTTCCAGACT
CCGCCGGGCTGGCAAAGCCGCGCAGGCGCCGGGGCAGGCGGGTTCGAGGAAACGGCAGACTTCTCGGAGTTTTTCAGCTC
CATTTTCGGTGGCCGGCCTCAGCAGGGCGGGCGTACCCGCAACCCGGGGCGTACCGGGCAGGACGTGGAGATGGAACTGG
CGGTGTTTCTCGAAGAAACCCTGTCGGGGGAATCCAAGCAGGTCAGCTTCAAGGTGCCGCAGCACAGCCCCAACGGGCAG
CGCATGAGTGATATCACCAAGACCCTGAACGTGAAGATTCCCGCGGGCGTCGTCGATGGCGAGCGTATTCGCCTGAAGGG
GCAGGGCGCGCCGGGCGTAGGCGGTGGTGCCAATGGCGATCTGTACCTGATCATTCGCCTGGCCCCGCACCCGCTGTTCG
AGGTCGAAGGCCATGATCTGGTCATCACCGTGCCGCTGGCCCCCTGGGAAGCCGTGCTGGGCACCAAGGTCGCCGTGCCG
ACGCTGACCAGCAGGATCAACCTGACCATCCGCCCGGACAGTCAGAACGGTCAGCGTCTGCGGATCAAGGGTAACGGCTT
GATGAACAAGAGTGGCGAACGCGGCGATCTTTATGCGCAGTTGAAAATCGTCGTGCCCAAGCACACCGACGAGGCTACGC
GGGCGCTCTGGCAGAAACTGGCCGACAGTTCTTCGTTCGATCCCCGTGCGCAGTGGAAGGGTTGA

Upstream 100 bases:

>100_bases
TTCGACGTTAGGTAATCCAGATGCCTCGTGACAGAGGGAGCTGGGCGCGTGACGCCAGCGTATCTGGCTTTGCCGGATAA
TTCGGATGGGTGATCGTTAC

Downstream 100 bases:

>100_bases
GCGGAGCAGTCTTGCGACTCGGTCTTTTCTGCCTGGGCTGATGCGGCACCCGTATCAGCAGGCAGTCAGCCCCGGTCAGT
TTTTCGGCAGCACCACATTG

Product: heat shock protein DnaJ, N-terminal:chaperone DnaJ, C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MDFKDYYKILAVEPTADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPEKRAEYDELRKYGRQGRPFQT
PPGWQSRAGAGAGGFEETADFSEFFSSIFGGRPQQGGRTRNPGRTGQDVEMELAVFLEETLSGESKQVSFKVPQHSPNGQ
RMSDITKTLNVKIPAGVVDGERIRLKGQGAPGVGGGANGDLYLIIRLAPHPLFEVEGHDLVITVPLAPWEAVLGTKVAVP
TLTSRINLTIRPDSQNGQRLRIKGNGLMNKSGERGDLYAQLKIVVPKHTDEATRALWQKLADSSSFDPRAQWKG

Sequences:

>Translated_314_residues
MDFKDYYKILAVEPTADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPEKRAEYDELRKYGRQGRPFQT
PPGWQSRAGAGAGGFEETADFSEFFSSIFGGRPQQGGRTRNPGRTGQDVEMELAVFLEETLSGESKQVSFKVPQHSPNGQ
RMSDITKTLNVKIPAGVVDGERIRLKGQGAPGVGGGANGDLYLIIRLAPHPLFEVEGHDLVITVPLAPWEAVLGTKVAVP
TLTSRINLTIRPDSQNGQRLRIKGNGLMNKSGERGDLYAQLKIVVPKHTDEATRALWQKLADSSSFDPRAQWKG
>Mature_314_residues
MDFKDYYKILAVEPTADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPEKRAEYDELRKYGRQGRPFQT
PPGWQSRAGAGAGGFEETADFSEFFSSIFGGRPQQGGRTRNPGRTGQDVEMELAVFLEETLSGESKQVSFKVPQHSPNGQ
RMSDITKTLNVKIPAGVVDGERIRLKGQGAPGVGGGANGDLYLIIRLAPHPLFEVEGHDLVITVPLAPWEAVLGTKVAVP
TLTSRINLTIRPDSQNGQRLRIKGNGLMNKSGERGDLYAQLKIVVPKHTDEATRALWQKLADSSSFDPRAQWKG

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI6631085, Length=333, Percent_Identity=32.1321321321321, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI5453690, Length=343, Percent_Identity=30.0291545189504, Blast_Score=131, Evalue=9e-31,
Organism=Homo sapiens, GI201862518, Length=349, Percent_Identity=29.512893982808, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI56549115, Length=349, Percent_Identity=29.512893982808, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI201862587, Length=349, Percent_Identity=29.512893982808, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI205360838, Length=356, Percent_Identity=28.6516853932584, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI205360840, Length=356, Percent_Identity=28.6516853932584, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI7706495, Length=342, Percent_Identity=31.5789473684211, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI39204547, Length=320, Percent_Identity=29.0625, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4504511, Length=354, Percent_Identity=27.4011299435028, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI194328760, Length=146, Percent_Identity=37.6712328767123, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI194328758, Length=146, Percent_Identity=37.6712328767123, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI194306642, Length=112, Percent_Identity=41.0714285714286, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI194306640, Length=112, Percent_Identity=41.0714285714286, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI56687498, Length=75, Percent_Identity=53.3333333333333, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI5031741, Length=69, Percent_Identity=59.4202898550725, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI22749377, Length=108, Percent_Identity=41.6666666666667, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI9558755, Length=131, Percent_Identity=39.6946564885496, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI72534740, Length=63, Percent_Identity=53.968253968254, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI47777312, Length=109, Percent_Identity=44.0366972477064, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI21553335, Length=73, Percent_Identity=52.0547945205479, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI27151736, Length=109, Percent_Identity=43.1192660550459, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI88501736, Length=109, Percent_Identity=43.1192660550459, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787235, Length=313, Percent_Identity=55.591054313099, Blast_Score=330, Evalue=6e-92,
Organism=Escherichia coli, GI1786197, Length=360, Percent_Identity=32.7777777777778, Blast_Score=171, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI17534355, Length=337, Percent_Identity=31.4540059347181, Blast_Score=127, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI17553096, Length=343, Percent_Identity=28.2798833819242, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17553098, Length=343, Percent_Identity=28.2798833819242, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI212645553, Length=337, Percent_Identity=27.299703264095, Blast_Score=98, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17538236, Length=117, Percent_Identity=40.1709401709402, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17554644, Length=63, Percent_Identity=53.968253968254, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=53.2258064516129, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17563890, Length=60, Percent_Identity=58.3333333333333, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=349, Percent_Identity=30.0859598853868, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6321094, Length=153, Percent_Identity=32.0261437908497, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6323870, Length=68, Percent_Identity=52.9411764705882, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323813, Length=118, Percent_Identity=41.5254237288136, Blast_Score=70, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6324321, Length=61, Percent_Identity=50.8196721311475, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322388, Length=96, Percent_Identity=39.5833333333333, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85726398, Length=360, Percent_Identity=32.5, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24658562, Length=326, Percent_Identity=34.0490797546012, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24658555, Length=326, Percent_Identity=34.0490797546012, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI18858081, Length=336, Percent_Identity=29.7619047619048, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI19920464, Length=344, Percent_Identity=29.3604651162791, Blast_Score=104, Evalue=9e-23,
Organism=Drosophila melanogaster, GI45552813, Length=370, Percent_Identity=27.2972972972973, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45549272, Length=370, Percent_Identity=27.8378378378378, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45552811, Length=370, Percent_Identity=27.2972972972973, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI20129487, Length=368, Percent_Identity=30.1630434782609, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24584014, Length=368, Percent_Identity=30.1630434782609, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24654066, Length=109, Percent_Identity=44.0366972477064, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24654070, Length=109, Percent_Identity=44.0366972477064, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24654068, Length=109, Percent_Identity=44.0366972477064, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24654072, Length=109, Percent_Identity=44.0366972477064, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646562, Length=81, Percent_Identity=48.1481481481481, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24646560, Length=81, Percent_Identity=48.1481481481481, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24646558, Length=81, Percent_Identity=48.1481481481481, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24646556, Length=81, Percent_Identity=48.1481481481481, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21357547, Length=81, Percent_Identity=48.1481481481481, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=54.6875, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 34555; Mature: 34555

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKDYYKILAVEPTADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPE
CCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHCCCH
KRAEYDELRKYGRQGRPFQTPPGWQSRAGAGAGGFEETADFSEFFSSIFGGRPQQGGRTR
HCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
NPGRTGQDVEMELAVFLEETLSGESKQVSFKVPQHSPNGQRMSDITKTLNVKIPAGVVDG
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHEEEEECCCCCCC
ERIRLKGQGAPGVGGGANGDLYLIIRLAPHPLFEVEGHDLVITVPLAPWEAVLGTKVAVP
CEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEEEEECCCHHHHHCCEEECC
TLTSRINLTIRPDSQNGQRLRIKGNGLMNKSGERGDLYAQLKIVVPKHTDEATRALWQKL
EECEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHH
ADSSSFDPRAQWKG
HCCCCCCCCCCCCC
>Mature Secondary Structure
MDFKDYYKILAVEPTADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPE
CCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHCCCH
KRAEYDELRKYGRQGRPFQTPPGWQSRAGAGAGGFEETADFSEFFSSIFGGRPQQGGRTR
HCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
NPGRTGQDVEMELAVFLEETLSGESKQVSFKVPQHSPNGQRMSDITKTLNVKIPAGVVDG
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHEEEEECCCCCCC
ERIRLKGQGAPGVGGGANGDLYLIIRLAPHPLFEVEGHDLVITVPLAPWEAVLGTKVAVP
CEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEEEEECCCHHHHHCCEEECC
TLTSRINLTIRPDSQNGQRLRIKGNGLMNKSGERGDLYAQLKIVVPKHTDEATRALWQKL
EECEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHH
ADSSSFDPRAQWKG
HCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]