Click here to switch to the map view.

The map label for this gene is 66047623

Identifier: 66047623

GI number: 66047623

Start: 5258246

End: 5258980

Strand: Direct

Name: 66047623

Synonym: Psyr_4396

Alternate gene names: NA

Gene position: 5258246-5258980 (Clockwise)

Preceding gene: 66047622

Following gene: 66047624

Centisome position: 86.29

GC content: 62.99

Gene sequence:

>735_bases
ATGAAACCAGTGATCGTACTACTCGGGCTGCTGTTGCTGGGCGGATGCGCCAGTGATGGTCGCCCCCTCTGGACGCAGAC
CACGGCTCAGGCGGGCCAGTGCCCCAAGCTGACCTCGGATCAGGAGTTCTCCCTGAATCTGGCTCAGAACATGGCCGACG
AAGGCCGGCTGCATGCCAGCCTTGCCAACCTGGAAAGCCTGCCCGACAGCCTGGGCGAAGTCCGCTTGCGCAAGGCCCGG
GTGTTGCGGCTATTAGGCAGCAACGAGGCAGAGCCTCTGTACCGCAGCCTGCTGGGCACCTGCCGGGCAGCCGAGGGTGA
GCATGGCCTCGGGCAACTGGCTGCGGCGCGTGGTGACAACGCGCTGGCACAGCAACACCTGCTGATGGCCAGCAAGCTGC
AACCGACCGATGAAAAGATCCGTAATGACCTGGGCGTCGTCTACCTCAATCAGCTGAAACTGGAACAGGCACGCTTTCAG
TTCCTGACGGCCATGGAGCTCAAACAATCGGACTCGCTGGCAGCGGTGAACCTGGCCACGCTGCTGATCTATCAGAACAA
CTGGACGCAGGCCGCCGAACTGGCGTCGCGGGCCGGGCTGACGCCTGAACAGGTGACCGATGCCCAGGCGCGCGCCGAGC
AATTGCGAAAGCCCCCTGCTGCTCGAGCATCTGCACGGCCCATTGCCAGCCTGACAGGACAAAATGATCGTCAGTCCCAG
GAGGTACGACCATGA

Upstream 100 bases:

>100_bases
CCGCCCTGCTGATTGTGCTGGCCGGGCCCGGATTTATGGCAATAAGCCGCGCACTGGGCAGTTGACCCGGTATTACCTGT
GCACGAAAGGACGCATTGCA

Downstream 100 bases:

>100_bases
AGCGCATGATACTCACCGGGTGTGTACTGCTGTTGAGCGCAGGAGATGCCTGGGCGGACAACCATGAAACTTCGCCTTCT
GAAACCCGGCAGACCGAGAC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKPVIVLLGLLLLGGCASDGRPLWTQTTAQAGQCPKLTSDQEFSLNLAQNMADEGRLHASLANLESLPDSLGEVRLRKAR
VLRLLGSNEAEPLYRSLLGTCRAAEGEHGLGQLAAARGDNALAQQHLLMASKLQPTDEKIRNDLGVVYLNQLKLEQARFQ
FLTAMELKQSDSLAAVNLATLLIYQNNWTQAAELASRAGLTPEQVTDAQARAEQLRKPPAARASARPIASLTGQNDRQSQ
EVRP

Sequences:

>Translated_244_residues
MKPVIVLLGLLLLGGCASDGRPLWTQTTAQAGQCPKLTSDQEFSLNLAQNMADEGRLHASLANLESLPDSLGEVRLRKAR
VLRLLGSNEAEPLYRSLLGTCRAAEGEHGLGQLAAARGDNALAQQHLLMASKLQPTDEKIRNDLGVVYLNQLKLEQARFQ
FLTAMELKQSDSLAAVNLATLLIYQNNWTQAAELASRAGLTPEQVTDAQARAEQLRKPPAARASARPIASLTGQNDRQSQ
EVRP
>Mature_244_residues
MKPVIVLLGLLLLGGCASDGRPLWTQTTAQAGQCPKLTSDQEFSLNLAQNMADEGRLHASLANLESLPDSLGEVRLRKAR
VLRLLGSNEAEPLYRSLLGTCRAAEGEHGLGQLAAARGDNALAQQHLLMASKLQPTDEKIRNDLGVVYLNQLKLEQARFQ
FLTAMELKQSDSLAAVNLATLLIYQNNWTQAAELASRAGLTPEQVTDAQARAEQLRKPPAARASARPIASLTGQNDRQSQ
EVRP

Specific function: Unknown

COG id: COG5010

COG function: function code U; Flp pilus assembly protein TadD, contains TPR repeats

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- InterPro:   IPR016931 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26452; Mature: 26452

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVIVLLGLLLLGGCASDGRPLWTQTTAQAGQCPKLTSDQEFSLNLAQNMADEGRLHAS
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LANLESLPDSLGEVRLRKARVLRLLGSNEAEPLYRSLLGTCRAAEGEHGLGQLAAARGDN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCH
ALAQQHLLMASKLQPTDEKIRNDLGVVYLNQLKLEQARFQFLTAMELKQSDSLAAVNLAT
HHHHHHHHHHHHCCCCHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEE
LLIYQNNWTQAAELASRAGLTPEQVTDAQARAEQLRKPPAARASARPIASLTGQNDRQSQ
EEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCC
EVRP
CCCC
>Mature Secondary Structure
MKPVIVLLGLLLLGGCASDGRPLWTQTTAQAGQCPKLTSDQEFSLNLAQNMADEGRLHAS
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LANLESLPDSLGEVRLRKARVLRLLGSNEAEPLYRSLLGTCRAAEGEHGLGQLAAARGDN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCH
ALAQQHLLMASKLQPTDEKIRNDLGVVYLNQLKLEQARFQFLTAMELKQSDSLAAVNLAT
HHHHHHHHHHHHCCCCHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEE
LLIYQNNWTQAAELASRAGLTPEQVTDAQARAEQLRKPPAARASARPIASLTGQNDRQSQ
EEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCC
EVRP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]