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The map label for this gene is atoC [H]

Identifier: 66047603

GI number: 66047603

Start: 5231747

End: 5232544

Strand: Direct

Name: atoC [H]

Synonym: Psyr_4376

Alternate gene names: 66047603

Gene position: 5231747-5232544 (Clockwise)

Preceding gene: 66047602

Following gene: 66047605

Centisome position: 85.86

GC content: 56.64

Gene sequence:

>798_bases
GTGGATAACTACCCGCTCACGAAAGTTCTAGTGGTCGATGACCAGCCCCTTATCGTTGAAGAACTCTGCGAGTTTCTGGA
GAGCAGCGGCTATGAGTGTGTGCGTTGCCATTCAAGCCTTGAGGCCATCGAGCATTTCAGCGCCGACAGCACCATCGGCA
TCGTACTCTGCGATCTGGAAATGCCCGGCATGAACGGCATCGAGATGGTCGAAGCGATGAAGATGGCTGGCGGCAAGACG
CACCTGTTCGAGGCCATCATGCTGACCGGCCAGGCCGAGAAAAAAGACGTCATCAAGGCGCTTCGGGCCGGCATCGCCGA
TTATTATCAGAAGCCGGTCGATCTGGAAGAATTGCTCGAGGCTGTGCAGTTGCAAGTCCAGGCGCTGCACGAGCGGCAGA
AAACCCGCCAGCAACTGGGCCTGCTCAACGAAAAGCTCCAGTTTCTGGCCGCCTCCATCGACGATCTTTATCAGAACCTG
GACAGCGTCCAGAACAGGCCTCAAACCGAGCGCAAAATGCGTAACCGCCAAGAACGTGATGGGCAGCAACGTGACGGGCA
AATGCCGGTGGCACTGGCCAAGTTGTCACCCCGCCAGCTGGATGTGGCGCGCCTGGTCAGCACCGGACTGACCAATTACC
AGATCGCCTGCGAACTGGGCATTACTGAAAACACTGTAAAACTCTATGTGTCGCAAGTGCTGCGCCTGACTCACATGCAT
AACCGCACACAATTGGCATTGGCATTTTCACCGGGCAAATCGGCAGAGCGGCAAAGGCAGAGCGAAAGCCAGGGCTGA

Upstream 100 bases:

>100_bases
TAATGTCACCAATACCCACACTGATCGAATAACGCCGAGTCATGTTTTGCTGAATGGATCGGGGCGCCGTCGGCGGCCCC
CTAACAGCATGGAGTTGCCT

Downstream 100 bases:

>100_bases
ACGGAAGTCAGGCTTCGATCCCGTTCAATACGACGTGATAAGGCACATCGACCAGCACCGAATGCACCCGATTGCGGCCG
GCGTGCTTGGCGCAGTACAA

Product: LuxR response regulator receiver

Products: NA

Alternate protein names: Ornithine decarboxylase antizyme; Ornithine/arginine decarboxylase inhibitor [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MDNYPLTKVLVVDDQPLIVEELCEFLESSGYECVRCHSSLEAIEHFSADSTIGIVLCDLEMPGMNGIEMVEAMKMAGGKT
HLFEAIMLTGQAEKKDVIKALRAGIADYYQKPVDLEELLEAVQLQVQALHERQKTRQQLGLLNEKLQFLAASIDDLYQNL
DSVQNRPQTERKMRNRQERDGQQRDGQMPVALAKLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMH
NRTQLALAFSPGKSAERQRQSESQG

Sequences:

>Translated_265_residues
MDNYPLTKVLVVDDQPLIVEELCEFLESSGYECVRCHSSLEAIEHFSADSTIGIVLCDLEMPGMNGIEMVEAMKMAGGKT
HLFEAIMLTGQAEKKDVIKALRAGIADYYQKPVDLEELLEAVQLQVQALHERQKTRQQLGLLNEKLQFLAASIDDLYQNL
DSVQNRPQTERKMRNRQERDGQQRDGQMPVALAKLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMH
NRTQLALAFSPGKSAERQRQSESQG
>Mature_265_residues
MDNYPLTKVLVVDDQPLIVEELCEFLESSGYECVRCHSSLEAIEHFSADSTIGIVLCDLEMPGMNGIEMVEAMKMAGGKT
HLFEAIMLTGQAEKKDVIKALRAGIADYYQKPVDLEELLEAVQLQVQALHERQKTRQQLGLLNEKLQFLAASIDDLYQNL
DSVQNRPQTERKMRNRQERDGQQRDGQMPVALAKLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMH
NRTQLALAFSPGKSAERQRQSESQG

Specific function: Member of the two-component regulatory system AtoS/AtoC involved in the transcriptional regulation of the ato genes for acetoacetate metabolism. Also an inhibitor of polyamine biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=144, Percent_Identity=29.8611111111111, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 29846; Mature: 29846

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNYPLTKVLVVDDQPLIVEELCEFLESSGYECVRCHSSLEAIEHFSADSTIGIVLCDLE
CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
MPGMNGIEMVEAMKMAGGKTHLFEAIMLTGQAEKKDVIKALRAGIADYYQKPVDLEELLE
CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AVQLQVQALHERQKTRQQLGLLNEKLQFLAASIDDLYQNLDSVQNRPQTERKMRNRQERD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GQQRDGQMPVALAKLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMH
CHHHCCCCCEEHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHC
NRTQLALAFSPGKSAERQRQSESQG
CCEEEEEEECCCCCHHHHHHHCCCC
>Mature Secondary Structure
MDNYPLTKVLVVDDQPLIVEELCEFLESSGYECVRCHSSLEAIEHFSADSTIGIVLCDLE
CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
MPGMNGIEMVEAMKMAGGKTHLFEAIMLTGQAEKKDVIKALRAGIADYYQKPVDLEELLE
CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AVQLQVQALHERQKTRQQLGLLNEKLQFLAASIDDLYQNLDSVQNRPQTERKMRNRQERD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GQQRDGQMPVALAKLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMH
CHHHCCCCCEEHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHC
NRTQLALAFSPGKSAERQRQSESQG
CCEEEEEEECCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 8346225 [H]