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The map label for this gene is lptE [H]

Identifier: 66047580

GI number: 66047580

Start: 5208025

End: 5208630

Strand: Direct

Name: lptE [H]

Synonym: Psyr_4353

Alternate gene names: 66047580

Gene position: 5208025-5208630 (Clockwise)

Preceding gene: 66047579

Following gene: 66047581

Centisome position: 85.47

GC content: 60.23

Gene sequence:

>606_bases
ATGATCAAACGCAATTTGCTGGTGATGGGCCTGGCTGTTCTGTTGAGTGCCTGTGGCTTCCAGCTGCGTGGCACCGGTAC
CACCGAGCTGGCGATCAAGGAGCTGGATGTCAGCGCCCGCAACGCCTATGGCGAAACCGTGACGCAACTCACTCGCCTGC
TGACCAGCTCTGGCGTCAAGGTCTATACCGGCGCGCCTTACAAGCTGATGCTGACCAACGAAGCCGAGACTCAGCGCGCC
ATCAGCTACTCGGGCTCGGGTCGCTCGGCTGAATACCAGCTGACCACCACCCTGACCTATGAAGTGCATGGCGACAAGGA
TCGCTTCCTGCTTGGCGATAAAGTCACCGCAGACCGTTCCTACGTGCACGACGGCAACAATCTGACCGGTTCCGACCAGG
AAGCCTCCCAGGTTCGTCAGGAAATGCGCAACGACCTGATCCAGAAAATGATGGCTCGCTTGCAGCAACTGACCCCTTCG
CGTCTGGACGAGCTGCAGGCCAAGGCCGATGCGGTTGCCAAGGCCGAAGCCGACGCACTGGAGGCTGCCCAGCGAATCCG
CGACGAGACGCCTCAGCAGTCGCCTGTCGAAGTTCCAGCCAGATAA

Upstream 100 bases:

>100_bases
TCGCAAGCTGATTGGATCGGGCGCCCGGCAAATGCAGGGCGCCGAACATATTTCCAGGGCACGCACTGGCGGCCCAAACG
GATTCAAGGGGAGCATCAAG

Downstream 100 bases:

>100_bases
GTGTCTGGGGCCGGTTCTCCGGCCCCGACATGCTCTGACTCATGAAACTCGCCCCCGCCCAACTCGGCAAGCACTTGCAA
GGCACACTGGCGCCCGTCTA

Product: rare lipoprotein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MIKRNLLVMGLAVLLSACGFQLRGTGTTELAIKELDVSARNAYGETVTQLTRLLTSSGVKVYTGAPYKLMLTNEAETQRA
ISYSGSGRSAEYQLTTTLTYEVHGDKDRFLLGDKVTADRSYVHDGNNLTGSDQEASQVRQEMRNDLIQKMMARLQQLTPS
RLDELQAKADAVAKAEADALEAAQRIRDETPQQSPVEVPAR

Sequences:

>Translated_201_residues
MIKRNLLVMGLAVLLSACGFQLRGTGTTELAIKELDVSARNAYGETVTQLTRLLTSSGVKVYTGAPYKLMLTNEAETQRA
ISYSGSGRSAEYQLTTTLTYEVHGDKDRFLLGDKVTADRSYVHDGNNLTGSDQEASQVRQEMRNDLIQKMMARLQQLTPS
RLDELQAKADAVAKAEADALEAAQRIRDETPQQSPVEVPAR
>Mature_201_residues
MIKRNLLVMGLAVLLSACGFQLRGTGTTELAIKELDVSARNAYGETVTQLTRLLTSSGVKVYTGAPYKLMLTNEAETQRA
ISYSGSGRSAEYQLTTTLTYEVHGDKDRFLLGDKVTADRSYVHDGNNLTGSDQEASQVRQEMRNDLIQKMMARLQQLTPS
RLDELQAKADAVAKAEADALEAAQRIRDETPQQSPVEVPAR

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane [H]

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 22096; Mature: 22096

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRNLLVMGLAVLLSACGFQLRGTGTTELAIKELDVSARNAYGETVTQLTRLLTSSGVK
CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCE
VYTGAPYKLMLTNEAETQRAISYSGSGRSAEYQLTTTLTYEVHGDKDRFLLGDKVTADRS
EEECCCEEEEEECCHHHHHHHEECCCCCCCEEEEEEEEEEEEECCCCCEEECCCCCCCCC
YVHDGNNLTGSDQEASQVRQEMRNDLIQKMMARLQQLTPSRLDELQAKADAVAKAEADAL
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
EAAQRIRDETPQQSPVEVPAR
HHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIKRNLLVMGLAVLLSACGFQLRGTGTTELAIKELDVSARNAYGETVTQLTRLLTSSGVK
CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCE
VYTGAPYKLMLTNEAETQRAISYSGSGRSAEYQLTTTLTYEVHGDKDRFLLGDKVTADRS
EEECCCEEEEEECCHHHHHHHEECCCCCCCEEEEEEEEEEEEECCCCCEEECCCCCCCCC
YVHDGNNLTGSDQEASQVRQEMRNDLIQKMMARLQQLTPSRLDELQAKADAVAKAEADAL
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
EAAQRIRDETPQQSPVEVPAR
HHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA