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The map label for this gene is ybeY [C]

Identifier: 66047574

GI number: 66047574

Start: 5200818

End: 5201318

Strand: Direct

Name: ybeY [C]

Synonym: Psyr_4347

Alternate gene names: 66047574

Gene position: 5200818-5201318 (Clockwise)

Preceding gene: 66047573

Following gene: 66047575

Centisome position: 85.35

GC content: 57.68

Gene sequence:

>501_bases
ATGCTTGAGCTGGACCTGCAGGTTGCAAGCGAGACCAGCGCCCCTGACGAAGCCCGATTGCGCCTCTGGTGTGAAATGGG
CTTGCGTCAGCGCAGTGCCGACTCCGAGCTGACCATCCGCCTGGTTGACGAAACCGAAGGCCGTGAGCTCAATAACACCT
GGCGACACAAAAATTACGCAACAAACGTGCTTTCATTCCCGGCGGACGTTCCGGACGACATGCTGGACATCCCGTTGCTG
GGCGATCTGGTCATCTGCGTTCCGGTCGTCAACCGTGAAGCCGTTGAACAGGGCAAGTCCGTCGACGCGCACTGGGCGCA
CATGGTCATTCATGGCTGCCTGCATCTGTTGGGTTACGACCACATCGATGATGAAGAAGCCGAAGAAATGGAAGCACTGG
AACGAACGTTGCTTGAGGAGCTGGGCTATCCCGATCCTTACGCCGACGACGAAAGTGCCGACCCTCCCCATTCAGACACA
CCAAGCAAGGACCACGAGTAA

Upstream 100 bases:

>100_bases
CCGCTGGTACAGCGCATCGTCGAAGCCTACGAGCGTTTCGACGACCGCCTCAGCGATGGTCCGTCGGGCAACAACATTTA
CCCACGGGACAAACACCGCG

Downstream 100 bases:

>100_bases
GGGCTATGAGCGAAGACCGATCGAGCAACGGGCAAAAGTCATGGTTGGGTAAACTGACCCAGGCCTTTGTCCATGAGCCG
AAAAACCGCCAGGAGCTGCT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MLELDLQVASETSAPDEARLRLWCEMGLRQRSADSELTIRLVDETEGRELNNTWRHKNYATNVLSFPADVPDDMLDIPLL
GDLVICVPVVNREAVEQGKSVDAHWAHMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADDESADPPHSDT
PSKDHE

Sequences:

>Translated_166_residues
MLELDLQVASETSAPDEARLRLWCEMGLRQRSADSELTIRLVDETEGRELNNTWRHKNYATNVLSFPADVPDDMLDIPLL
GDLVICVPVVNREAVEQGKSVDAHWAHMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADDESADPPHSDT
PSKDHE
>Mature_166_residues
MLELDLQVASETSAPDEARLRLWCEMGLRQRSADSELTIRLVDETEGRELNNTWRHKNYATNVLSFPADVPDDMLDIPLL
GDLVICVPVVNREAVEQGKSVDAHWAHMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADDESADPPHSDT
PSKDHE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=146, Percent_Identity=56.8493150684932, Blast_Score=144, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 18772; Mature: 18772

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELDLQVASETSAPDEARLRLWCEMGLRQRSADSELTIRLVDETEGRELNNTWRHKNYA
CCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCHHH
TNVLSFPADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWAHMVIHGCLHLLGYD
HHHHCCCCCCCHHHCCCCCCCCHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
HIDDEEAEEMEALERTLLEELGYPDPYADDESADPPHSDTPSKDHE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLELDLQVASETSAPDEARLRLWCEMGLRQRSADSELTIRLVDETEGRELNNTWRHKNYA
CCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCHHH
TNVLSFPADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWAHMVIHGCLHLLGYD
HHHHCCCCCCCHHHCCCCCCCCHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
HIDDEEAEEMEALERTLLEELGYPDPYADDESADPPHSDTPSKDHE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA