Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 66047466

GI number: 66047466

Start: 5051620

End: 5052630

Strand: Direct

Name: dppB [H]

Synonym: Psyr_4239

Alternate gene names: 66047466

Gene position: 5051620-5052630 (Clockwise)

Preceding gene: 66047465

Following gene: 66047467

Centisome position: 82.9

GC content: 59.64

Gene sequence:

>1011_bases
ATGTTTAGTTTTATCGCCCGCCGAGTGGGGTTGCTGATACCCACTTTCTTCGGCATCACCTTATTGACCTTCGCCCTGAT
TCGTCTGATTCCGGGCGATCCGGTCGAAGTCATGATGGGTGAGCGCCGTGTCGATCCGGAAATGCACGCTCAGGCCATGG
AGCGTCTGGGTCTGAACAAACCCCTCTACGCCCAGTACATCGATTACATCGGCAAGCTCGCCCAGGGCGACCTCGGTGAA
TCGCTGCGTACGCGCACCAGTGTCTGGTCCGAATTCACTTCGCTGTTCCCGGCAACCCTGGAGTTGTCGCTGGCGGCGCT
GATTTTCGCGGGTATTCTCGGCCTGCTGGCCGGGGTGATCGCCGCACTCAAGCGAGGGTCCCTGTTCGACCATGGGGTCA
TGGGGATTTCCCTCGCCGGTTATTCCATGCCGATCTTCTGGTGGGGCCTGATCCTCATCATGTTCTTCTCGGTAACGCTG
GGCTGGACCCCGGTTTCCGGGCGCATCGACCTGCTGTACGACATTCCGCCGGTCACCGGCTTCATGCTGATCGACACGCT
GCTCAGTGACGAACAGGGTTCGTTCCTCGATGCCCTGCACCACATGATTCTGCCGGCCATCGTACTGGGCACCATCCCGC
TCGCGGTGATCGCCCGGATGACTCGCTCGTCGATGCTCGAAGTGCTGCGTGAAGACTACGTGCGTACCGCCAGAGCCAAA
GGCCTGTCGCCTGCCCGTGTGGTATTCGTTCATGGCCTGCGCAATGCGCTGATTCCGGTACTGACCGTGTTCGGTCTGCA
AATCGGTACCTTGCTGGCCGGTGCGGTACTGACCGAAACGATCTTCTCCTGGCCGGGTATCGGCAAGTGGTTGATCGAAG
CCATTGGCGCCCGGGACTACCCGGTCGTGCAAAACGGCATTCTGCTGATCGCCTGTCTGGTGATCCTGGTCAATTTCGTG
GTGGATATCCTCTACGGCTTTGCCAACCCACGCATTCGTCACCAGCGCTGA

Upstream 100 bases:

>100_bases
ACTTCGCCACTACCCAGGTGAAGTAGAAAAATAATCCGGCGAGCTCATAACCCGAGACTCGCCGGAGCACGCCTAACCGG
CTGATGAGGTACACACCAAG

Downstream 100 bases:

>100_bases
GATCATCGATATGAGCACCCCTACTCCTGCGGTAGCAGTCGATCAAAGCCTGCTTTACCCATCCCCGTACAAAGAATTCT
GGCAAGCCTTCTCGAAAAAC

Product: binding-protein dependent transport system inner membrane protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYIDYIGKLAQGDLGE
SLRTRTSVWSEFTSLFPATLELSLAALIFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTL
GWTPVSGRIDLLYDIPPVTGFMLIDTLLSDEQGSFLDALHHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAK
GLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVILVNFV
VDILYGFANPRIRHQR

Sequences:

>Translated_336_residues
MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYIDYIGKLAQGDLGE
SLRTRTSVWSEFTSLFPATLELSLAALIFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTL
GWTPVSGRIDLLYDIPPVTGFMLIDTLLSDEQGSFLDALHHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAK
GLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVILVNFV
VDILYGFANPRIRHQR
>Mature_336_residues
MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYIDYIGKLAQGDLGE
SLRTRTSVWSEFTSLFPATLELSLAALIFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTL
GWTPVSGRIDLLYDIPPVTGFMLIDTLLSDEQGSFLDALHHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAK
GLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVILVNFV
VDILYGFANPRIRHQR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=63.716814159292, Blast_Score=444, Evalue=1e-126,
Organism=Escherichia coli, GI1787053, Length=339, Percent_Identity=41.8879056047198, Blast_Score=258, Evalue=4e-70,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=43.6746987951807, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1787550, Length=278, Percent_Identity=41.726618705036, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=37.910447761194, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1789888, Length=338, Percent_Identity=34.6153846153846, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI1788504, Length=373, Percent_Identity=26.8096514745308, Blast_Score=135, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36965; Mature: 36965

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCC
PLYAQYIDYIGKLAQGDLGESLRTRTSVWSEFTSLFPATLELSLAALIFAGILGLLAGVI
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTLGWTPVSGRIDLLYDIPPVTG
HHHHCCCCHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHH
FMLIDTLLSDEQGSFLDALHHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCC
PLYAQYIDYIGKLAQGDLGESLRTRTSVWSEFTSLFPATLELSLAALIFAGILGLLAGVI
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTLGWTPVSGRIDLLYDIPPVTG
HHHHCCCCHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHH
FMLIDTLLSDEQGSFLDALHHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]