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The map label for this gene is rnfH

Identifier: 66047427

GI number: 66047427

Start: 4996373

End: 4996687

Strand: Reverse

Name: rnfH

Synonym: Psyr_4200

Alternate gene names: 66047427

Gene position: 4996687-4996373 (Counterclockwise)

Preceding gene: 66047428

Following gene: 66047425

Centisome position: 82.0

GC content: 60.63

Gene sequence:

>315_bases
ATGGCTGACGCATCGATTCAGATAGAGGTGGTCTACGCCTCTGTACAGCGCCAGGTATTGAAGACAGTCGATGTACCGAC
CGGTTCTTCGGTGCGTCAGGCGCTGGCACTCAGCGGCATCGACAAGGAGTTTCCCGAACTGGATCTGAGCCAGTGCGCCG
TGGGTATTTTCGGCAAGGTGGTGACTGATCCTGCTGCGCGGGTGCTGGAGGCGGGGGAGCGGATAGAGATTTATCGTCTG
CTGGTGGCCGACCCCATGGAGATCAGGCGTCTGCGTGCCGCCAGGGCGCGTGAGAAAAGAGGGCTTCCCGGCTGA

Upstream 100 bases:

>100_bases
GATTATGCCGGCACCATCGTTCGCGCCACGCTGGGGCCGCTGTTCAATCAGGCAGCCAACACGCTGGTGGATGCGTTCTG
CCAGCGAGCGAAAGAGCTGC

Downstream 100 bases:

>100_bases
ACGCAGGCTGAATGGAAAGCACAAAAAGCCCGGCATGCCGGGCTTTTTGTTGGACGCTTTGGACTACCGGGAGTTGGTGT
CCAGCGGTTCCTGAGTCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MADASIQIEVVYASVQRQVLKTVDVPTGSSVRQALALSGIDKEFPELDLSQCAVGIFGKVVTDPAARVLEAGERIEIYRL
LVADPMEIRRLRAARAREKRGLPG

Sequences:

>Translated_104_residues
MADASIQIEVVYASVQRQVLKTVDVPTGSSVRQALALSGIDKEFPELDLSQCAVGIFGKVVTDPAARVLEAGERIEIYRL
LVADPMEIRRLRAARAREKRGLPG
>Mature_103_residues
ADASIQIEVVYASVQRQVLKTVDVPTGSSVRQALALSGIDKEFPELDLSQCAVGIFGKVVTDPAARVLEAGERIEIYRLL
VADPMEIRRLRAARAREKRGLPG

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family

Homologues:

Organism=Escherichia coli, GI87082139, Length=96, Percent_Identity=37.5, Blast_Score=62, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFH_PSEU2 (Q4ZNP2)

Other databases:

- EMBL:   CP000075
- RefSeq:   YP_237268.1
- ProteinModelPortal:   Q4ZNP2
- SMR:   Q4ZNP2
- STRING:   Q4ZNP2
- GeneID:   3369739
- GenomeReviews:   CP000075_GR
- KEGG:   psb:Psyr_4200
- NMPDR:   fig|205918.4.peg.4635
- eggNOG:   COG2914
- HOGENOM:   HBG700644
- OMA:   PKDVRRK
- ProtClustDB:   CLSK410778
- BioCyc:   PSYR205918:PSYR_4200-MONOMER
- HAMAP:   MF_00460
- InterPro:   IPR005346

Pfam domain/function: PF03658 UPF0125

EC number: NA

Molecular weight: Translated: 11347; Mature: 11216

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADASIQIEVVYASVQRQVLKTVDVPTGSSVRQALALSGIDKEFPELDLSQCAVGIFGKV
CCCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
VTDPAARVLEAGERIEIYRLLVADPMEIRRLRAARAREKRGLPG
HCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADASIQIEVVYASVQRQVLKTVDVPTGSSVRQALALSGIDKEFPELDLSQCAVGIFGKV
CCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
VTDPAARVLEAGERIEIYRLLVADPMEIRRLRAARAREKRGLPG
HCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA