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The map label for this gene is phoD [H]

Identifier: 66047398

GI number: 66047398

Start: 4960367

End: 4961950

Strand: Reverse

Name: phoD [H]

Synonym: Psyr_4171

Alternate gene names: 66047398

Gene position: 4961950-4960367 (Counterclockwise)

Preceding gene: 66047402

Following gene: 66047397

Centisome position: 81.43

GC content: 62.94

Gene sequence:

>1584_bases
GTGAGCCAGTTCGATCTCAAGCGTCGCCGTGTCATCCAGGCCGTCGGAACGGTAGGTGCCGGTCTGCTGTTACCGGGTGT
TGCACCGGCGGTCATCGCCTCGGTGCAGGATCGTCCGAAGATGATGGATGGCGTGCAGTCCGGCGATGTGTTCGGCGACA
AGGCGATCGTCTGGAGCCGCAGCGACCGGCCTTCGCGCATGGTCGTCGAGTGGGACACGCGCAGCATGTTCACCCAGCCA
CGCCGCGTGGTGTCGGCGCTGGCCGATCAGCGTAGCGACTTTACCGCGCGGGTCGAGTTGAGCGGGCTGCCTGTCGATCA
GGCGATTTTCTACCGGGTGTCTTTCGAGGATGCGCAGAGCGGTGTCGTCAGCGAGCCGTGGTTCGGTCATTTGCGCAGCA
CGCCGCAGCAGCGCCGCGACATCCGCTTCGTCTGGAGCGGCGACACGGTGGGGCAGGGCTTTGGCATCAACCCCGATATT
GGCGGCATGCGTATCTATGAAGCCATGCGTTTGCGCTTGCCGGACTTTTTTATCCACAGCGGTGACACCATCTACGCCGA
CAGCCCGGTGCCGGAGCAGCTCACCACGGAGGGCGGGCGCGTCTGGCGCAACATCACCACCGAGGCGAAGAGCAAGGTGG
CGGAGACCCTCGACGAATACCGGGGCAATTACCGCTACAACCTGATGGATGAAAACCTGCGCCGCTTCAACGCCGAAGTG
CCGCAGATCTGGCAGTGGGACGATCACGAAGTGACCAACAACTGGTCACCCAGCAAACAGCTCGATGATCGCTACAAGGT
CAAGGACATCGGCCTGCTGTCCTCGCGTGCCCGCCAGGCTTATCTGGAATACGCGCCGCTGCGCTTGCAGGAAGCCGACA
ATGGCGGGCGCATTTATCGCAAGATCCCCTACGGTCCGATGCTCGACGTTTTCGTCCTCGATATGCGCAGCTACCGCGCC
GGCAACGATGCCAACCTGGCCGACAAGCCGGGTGCGACCACCGCATTCATGGGCCGTGAGCAACTGGACTGGCTCAAGCG
TGAGCTCAATGCATCGCGCGCGCAGTGGAAAGTCATCGCGGCGGACATGCCCATTGGCCTGGGCGTGCCGGATGGCGAGG
TCAGCCCCGGCGTACCGCGTTGGGAGGCCATCGCCAACGGCAATGACGGTCCGGCGTTGGGGCGTGAGTTGGAGGTCGCC
GAATTGCTGGCGTACCTGCGCGCGCAGAAGATTCGCGATTGCGTCTGGCTGACCGCCGACGTGCATTACTGCGCGGCGCA
TCATTACCAGCCGGACCTGGCCGTGTTTCAGGACTTCGACCCGTTCTGGGAGTTCGTCGCCGGGCCATTGAACGCCGGTA
GCTATGGTCCCAACGTGCTGGACAAGACCTTTGGTCCCGAGCTGGTGTTCCAGAAAGCGCCACCTGCGCAGAACACCTCG
CCGTTTGCGGGTTTTCAGTTTTTTGGCGAAGTGAATATCGACGGGCAGACCGGTGAGATGACCGTGGCGCTGCGCGATCT
GGACGGGGTCTCGGTCTTCGAGCGCAAGCTCCAGCCTGTGAAGGAAGTCAGCCGCATCGTCTGA

Upstream 100 bases:

>100_bases
GGTTTTTGGCGTCTGCCATGCGCTTGATCTCCTGCGTTGTCATACAGCGCCAATATTCCCCCGCTACGGTGCTTTTTTGC
CTGTCAGCGAGGGGATAACC

Downstream 100 bases:

>100_bases
TGAACAACAGACGCGGCGCGGTGATCAGGGTTTCGGAAATTCCGTGCAACATGCTCGTCCTCGGTGGCCTATCATGAGCT
ACCTAACGACGGGACCGGAT

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: APaseD [H]

Number of amino acids: Translated: 527; Mature: 526

Protein sequence:

>527_residues
MSQFDLKRRRVIQAVGTVGAGLLLPGVAPAVIASVQDRPKMMDGVQSGDVFGDKAIVWSRSDRPSRMVVEWDTRSMFTQP
RRVVSALADQRSDFTARVELSGLPVDQAIFYRVSFEDAQSGVVSEPWFGHLRSTPQQRRDIRFVWSGDTVGQGFGINPDI
GGMRIYEAMRLRLPDFFIHSGDTIYADSPVPEQLTTEGGRVWRNITTEAKSKVAETLDEYRGNYRYNLMDENLRRFNAEV
PQIWQWDDHEVTNNWSPSKQLDDRYKVKDIGLLSSRARQAYLEYAPLRLQEADNGGRIYRKIPYGPMLDVFVLDMRSYRA
GNDANLADKPGATTAFMGREQLDWLKRELNASRAQWKVIAADMPIGLGVPDGEVSPGVPRWEAIANGNDGPALGRELEVA
ELLAYLRAQKIRDCVWLTADVHYCAAHHYQPDLAVFQDFDPFWEFVAGPLNAGSYGPNVLDKTFGPELVFQKAPPAQNTS
PFAGFQFFGEVNIDGQTGEMTVALRDLDGVSVFERKLQPVKEVSRIV

Sequences:

>Translated_527_residues
MSQFDLKRRRVIQAVGTVGAGLLLPGVAPAVIASVQDRPKMMDGVQSGDVFGDKAIVWSRSDRPSRMVVEWDTRSMFTQP
RRVVSALADQRSDFTARVELSGLPVDQAIFYRVSFEDAQSGVVSEPWFGHLRSTPQQRRDIRFVWSGDTVGQGFGINPDI
GGMRIYEAMRLRLPDFFIHSGDTIYADSPVPEQLTTEGGRVWRNITTEAKSKVAETLDEYRGNYRYNLMDENLRRFNAEV
PQIWQWDDHEVTNNWSPSKQLDDRYKVKDIGLLSSRARQAYLEYAPLRLQEADNGGRIYRKIPYGPMLDVFVLDMRSYRA
GNDANLADKPGATTAFMGREQLDWLKRELNASRAQWKVIAADMPIGLGVPDGEVSPGVPRWEAIANGNDGPALGRELEVA
ELLAYLRAQKIRDCVWLTADVHYCAAHHYQPDLAVFQDFDPFWEFVAGPLNAGSYGPNVLDKTFGPELVFQKAPPAQNTS
PFAGFQFFGEVNIDGQTGEMTVALRDLDGVSVFERKLQPVKEVSRIV
>Mature_526_residues
SQFDLKRRRVIQAVGTVGAGLLLPGVAPAVIASVQDRPKMMDGVQSGDVFGDKAIVWSRSDRPSRMVVEWDTRSMFTQPR
RVVSALADQRSDFTARVELSGLPVDQAIFYRVSFEDAQSGVVSEPWFGHLRSTPQQRRDIRFVWSGDTVGQGFGINPDIG
GMRIYEAMRLRLPDFFIHSGDTIYADSPVPEQLTTEGGRVWRNITTEAKSKVAETLDEYRGNYRYNLMDENLRRFNAEVP
QIWQWDDHEVTNNWSPSKQLDDRYKVKDIGLLSSRARQAYLEYAPLRLQEADNGGRIYRKIPYGPMLDVFVLDMRSYRAG
NDANLADKPGATTAFMGREQLDWLKRELNASRAQWKVIAADMPIGLGVPDGEVSPGVPRWEAIANGNDGPALGRELEVAE
LLAYLRAQKIRDCVWLTADVHYCAAHHYQPDLAVFQDFDPFWEFVAGPLNAGSYGPNVLDKTFGPELVFQKAPPAQNTSP
FAGFQFFGEVNIDGQTGEMTVALRDLDGVSVFERKLQPVKEVSRIV

Specific function: Unknown

COG id: COG3540

COG function: function code P; Phosphodiesterase/alkaline phosphatase D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PhoD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018946
- InterPro:   IPR006311 [H]

Pfam domain/function: PF09423 PhoD [H]

EC number: =3.1.3.1 [H]

Molecular weight: Translated: 59248; Mature: 59116

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFDLKRRRVIQAVGTVGAGLLLPGVAPAVIASVQDRPKMMDGVQSGDVFGDKAIVWSR
CCCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEC
SDRPSRMVVEWDTRSMFTQPRRVVSALADQRSDFTARVELSGLPVDQAIFYRVSFEDAQS
CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCHHCC
GVVSEPWFGHLRSTPQQRRDIRFVWSGDTVGQGFGINPDIGGMRIYEAMRLRLPDFFIHS
CCCCCCCHHHHHCCHHHHCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC
GDTIYADSPVPEQLTTEGGRVWRNITTEAKSKVAETLDEYRGNYRYNLMDENLRRFNAEV
CCEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCC
PQIWQWDDHEVTNNWSPSKQLDDRYKVKDIGLLSSRARQAYLEYAPLRLQEADNGGRIYR
CCEECCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEE
KIPYGPMLDVFVLDMRSYRAGNDANLADKPGATTAFMGREQLDWLKRELNASRAQWKVIA
ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCEEEEEE
ADMPIGLGVPDGEVSPGVPRWEAIANGNDGPALGRELEVAELLAYLRAQKIRDCVWLTAD
ECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECC
VHYCAAHHYQPDLAVFQDFDPFWEFVAGPLNAGSYGPNVLDKTFGPELVFQKAPPAQNTS
HHHHHHHCCCCCHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCC
PFAGFQFFGEVNIDGQTGEMTVALRDLDGVSVFERKLQPVKEVSRIV
CCCCEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQFDLKRRRVIQAVGTVGAGLLLPGVAPAVIASVQDRPKMMDGVQSGDVFGDKAIVWSR
CCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEC
SDRPSRMVVEWDTRSMFTQPRRVVSALADQRSDFTARVELSGLPVDQAIFYRVSFEDAQS
CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCHHCC
GVVSEPWFGHLRSTPQQRRDIRFVWSGDTVGQGFGINPDIGGMRIYEAMRLRLPDFFIHS
CCCCCCCHHHHHCCHHHHCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC
GDTIYADSPVPEQLTTEGGRVWRNITTEAKSKVAETLDEYRGNYRYNLMDENLRRFNAEV
CCEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCC
PQIWQWDDHEVTNNWSPSKQLDDRYKVKDIGLLSSRARQAYLEYAPLRLQEADNGGRIYR
CCEECCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEE
KIPYGPMLDVFVLDMRSYRAGNDANLADKPGATTAFMGREQLDWLKRELNASRAQWKVIA
ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCEEEEEE
ADMPIGLGVPDGEVSPGVPRWEAIANGNDGPALGRELEVAELLAYLRAQKIRDCVWLTAD
ECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECC
VHYCAAHHYQPDLAVFQDFDPFWEFVAGPLNAGSYGPNVLDKTFGPELVFQKAPPAQNTS
HHHHHHHCCCCCHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCC
PFAGFQFFGEVNIDGQTGEMTVALRDLDGVSVFERKLQPVKEVSRIV
CCCCEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760916; 9384377; 7704254; 25878 [H]