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The map label for this gene is sodA [H]

Identifier: 66047379

GI number: 66047379

Start: 4938264

End: 4938875

Strand: Reverse

Name: sodA [H]

Synonym: Psyr_4152

Alternate gene names: 66047379

Gene position: 4938875-4938264 (Counterclockwise)

Preceding gene: 66047380

Following gene: 66047368

Centisome position: 81.05

GC content: 57.84

Gene sequence:

>612_bases
ATGCCATACACCTTGCCTGCACTGCCTTACGCATACGATGCCCTTGAACCACATATCGATGCGCAAACCATGGAAATCCA
CTACACCAAGCATCACCAGACGTACATCAATAACCTCAATGCCGCGGTCGAAGGGACGGAGTTCGCCGACTGGTCGGTGG
AGAAGCTGGTGGCCAGTGTCCAGCAGTTGCCTGAAAACCTGCGTCCAGCGGTGATCAATCAGGGTGGCGGCCATGCCAAT
CACTCGTTGTTCTGGGAAGTCATGGTGCCGGGCGGCGGCGGCTTGCCCACGGGCGCTGTCGCGTCTGCCATCAATGAGCA
ACTGGGTGGCTACGAAAGCTTCAAGGAGGCATTCACCAAGGCCGCATTGACCCGTTTCGGCAGTGGCTGGGCATGGCTGA
GCGTCACGCCTGACAAAAAGCTGGTGGTGGAAAGCAGTGGTAACCAGGACAGCCCGCTGATGAACGGCAACACGCCGATT
CTGGGGCTGGACGTGTGGGAGCACGCTTACTACCTGCGCTATCAGAACCGTCGTCCCGAATACATCAATGCGTTCTACAA
CGTGATCAATTGGGATGAGGTGTCCCGCCGTTATCAGGCCGCTCTGGCCTGA

Upstream 100 bases:

>100_bases
CGCACTCATCGGTTGCTGAACAGCGGCAGCGAGCACACCCGTTCATCGCTACAGCGCCATTCGGCAAGCCCTTCCGGACT
TTTCTACGGAGCACATTGAA

Downstream 100 bases:

>100_bases
GCCTGGCAGCCGGACCCAAGGCGGCGTATGCGCTCCGGATTCCTCACGCTCAGCAATGTGCGGTTATTTCGTCTGGCAGT
CGGGAGCGTGCTGCTGTTGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MPYTLPALPYAYDALEPHIDAQTMEIHYTKHHQTYINNLNAAVEGTEFADWSVEKLVASVQQLPENLRPAVINQGGGHAN
HSLFWEVMVPGGGGLPTGAVASAINEQLGGYESFKEAFTKAALTRFGSGWAWLSVTPDKKLVVESSGNQDSPLMNGNTPI
LGLDVWEHAYYLRYQNRRPEYINAFYNVINWDEVSRRYQAALA

Sequences:

>Translated_203_residues
MPYTLPALPYAYDALEPHIDAQTMEIHYTKHHQTYINNLNAAVEGTEFADWSVEKLVASVQQLPENLRPAVINQGGGHAN
HSLFWEVMVPGGGGLPTGAVASAINEQLGGYESFKEAFTKAALTRFGSGWAWLSVTPDKKLVVESSGNQDSPLMNGNTPI
LGLDVWEHAYYLRYQNRRPEYINAFYNVINWDEVSRRYQAALA
>Mature_202_residues
PYTLPALPYAYDALEPHIDAQTMEIHYTKHHQTYINNLNAAVEGTEFADWSVEKLVASVQQLPENLRPAVINQGGGHANH
SLFWEVMVPGGGGLPTGAVASAINEQLGGYESFKEAFTKAALTRFGSGWAWLSVTPDKKLVVESSGNQDSPLMNGNTPIL
GLDVWEHAYYLRYQNRRPEYINAFYNVINWDEVSRRYQAALA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=204, Percent_Identity=46.078431372549, Blast_Score=184, Evalue=5e-47,
Organism=Homo sapiens, GI67782305, Length=204, Percent_Identity=46.078431372549, Blast_Score=184, Evalue=5e-47,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=37.6237623762376, Blast_Score=137, Evalue=7e-33,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=56.5217391304348, Blast_Score=238, Evalue=2e-64,
Organism=Escherichia coli, GI1787946, Length=200, Percent_Identity=45.5, Blast_Score=191, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17506561, Length=204, Percent_Identity=39.7058823529412, Blast_Score=155, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17569479, Length=202, Percent_Identity=38.6138613861386, Blast_Score=149, Evalue=6e-37,
Organism=Saccharomyces cerevisiae, GI6321796, Length=213, Percent_Identity=45.0704225352113, Blast_Score=157, Evalue=2e-39,
Organism=Drosophila melanogaster, GI17136812, Length=202, Percent_Identity=44.5544554455446, Blast_Score=163, Evalue=6e-41,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22628; Mature: 22497

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYTLPALPYAYDALEPHIDAQTMEIHYTKHHQTYINNLNAAVEGTEFADWSVEKLVASV
CCCCCCCCCHHHHHCCCCCCCEEEEEEEEHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHH
QQLPENLRPAVINQGGGHANHSLFWEVMVPGGGGLPTGAVASAINEQLGGYESFKEAFTK
HHHHHHCCCEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
AALTRFGSGWAWLSVTPDKKLVVESSGNQDSPLMNGNTPILGLDVWEHAYYLRYQNRRPE
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCEECCCCCEEEEHHHHHHEEEEECCCCCH
YINAFYNVINWDEVSRRYQAALA
HHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
PYTLPALPYAYDALEPHIDAQTMEIHYTKHHQTYINNLNAAVEGTEFADWSVEKLVASV
CCCCCCCCHHHHHCCCCCCCEEEEEEEEHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHH
QQLPENLRPAVINQGGGHANHSLFWEVMVPGGGGLPTGAVASAINEQLGGYESFKEAFTK
HHHHHHCCCEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
AALTRFGSGWAWLSVTPDKKLVVESSGNQDSPLMNGNTPILGLDVWEHAYYLRYQNRRPE
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCEECCCCCEEEEHHHHHHEEEEECCCCCH
YINAFYNVINWDEVSRRYQAALA
HHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA