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The map label for this gene is yhcM [H]

Identifier: 66047349

GI number: 66047349

Start: 4911019

End: 4912113

Strand: Reverse

Name: yhcM [H]

Synonym: Psyr_4122

Alternate gene names: 66047349

Gene position: 4912113-4911019 (Counterclockwise)

Preceding gene: 66047350

Following gene: 66047347

Centisome position: 80.61

GC content: 57.63

Gene sequence:

>1095_bases
ATGACGCCCCTAGAACGATATCAAGCTGATCTGAAACGCCCGGACTTCTTTCACGATGCCGCTCAGGAAAACGCTGTGCG
TCATCTGCAGCGCCTGTACGACGATCTGATCGCCGCTCACGACAGCAAGCCCGGCCTGTTCGGCAAACTGTTCGGCAAGA
AAGAGCAGACGCTGGTCAAGGGGCTGTACTTCTGGGGTGGCGTAGGTCGCGGCAAGACGTATCTGGTCGATACGTTCTTC
GACGCGCTGCCGTTCCAGGACAAGGTCCGTACGCACTTCCACCGCTTCATGAAGCGCGTGCACGAAGAGATGAAGACCCT
CAAGGGCGAGAAAAACCCGCTGACGATCATCGCCAGGCGTTTTTCCGACGAGGCGCGGGTCATCTGTTTCGACGAATTTT
TCGTCTCCGATATCACTGATGCCATGATCCTCGGCACGCTGATGGAAGAGCTGTTCAAGAACGGCGTGACGCTGGTGGCG
ACTTCCAACATCGTTCCGGACGGTCTGTACAAGGACGGCCTGCAGCGGGCGCGCTTCCTGCCGGCCATCGCGCTGATCAA
GCAGAACACCGACATCGTCAACGTCGACAGTGGCGTCGATTACCGTCTGCGGCATCTGGAGCAGGCCGAACTGTTCCACT
TCCCGCTCAACGAAGTTGCACAGGAAAGTCTGCGTAAAAGCTTCAAGGCACTGACGCCGGATTGCGCAGAAACCATCGAA
AACGATGTGTTGATGATCGAAAACCGCGAGATCCGTGCGCTGCGCACCTGTGACGATGTGGCATGGTTCGACTTCCGTGA
GTTGTGCGACGGCCCGCGCAGTCAGAACGACTACATCGAGCTGGGCAAGATCTTCCATGCCGTGCTGATCAGCGGTGTCG
AGCAGATGGACGTTGCCACTGACGACATCGCCCGACGCTTTATCAACATGGTCGACGAGTTCTACGATCGCAACGTCAAG
CTGATCATCTCGGCAGAGGTTGAATTGAAGGACCTGTACACCGGTGGCCGCTTGATGTTCGAGTTCCAGCGCACCTTGAG
CCGTCTGCTGGAAATGCAGTCCCACGAGTTCCTCTCGCGGGCGCACAGGGCCTAG

Upstream 100 bases:

>100_bases
AAACGCTCAAGCTGGCGCTCGCTCCCCAACAGGACTGATTGCCAATCCCCGGGGTCGTCGCTACAGTGACGACCCGTTTT
TGTTGCCTTGCTAACGAATT

Downstream 100 bases:

>100_bases
TCGCTGCGGCAAGTTTCAAGCTGCAAGCCGCAAGCTAAAAGCCCAGGCTCTTGCAGCTTGCAGCTTGCAGCTTGCAGCTT
GCAGCTTGCAGCTTATAGCT

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MTPLERYQADLKRPDFFHDAAQENAVRHLQRLYDDLIAAHDSKPGLFGKLFGKKEQTLVKGLYFWGGVGRGKTYLVDTFF
DALPFQDKVRTHFHRFMKRVHEEMKTLKGEKNPLTIIARRFSDEARVICFDEFFVSDITDAMILGTLMEELFKNGVTLVA
TSNIVPDGLYKDGLQRARFLPAIALIKQNTDIVNVDSGVDYRLRHLEQAELFHFPLNEVAQESLRKSFKALTPDCAETIE
NDVLMIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLISGVEQMDVATDDIARRFINMVDEFYDRNVK
LIISAEVELKDLYTGGRLMFEFQRTLSRLLEMQSHEFLSRAHRA

Sequences:

>Translated_364_residues
MTPLERYQADLKRPDFFHDAAQENAVRHLQRLYDDLIAAHDSKPGLFGKLFGKKEQTLVKGLYFWGGVGRGKTYLVDTFF
DALPFQDKVRTHFHRFMKRVHEEMKTLKGEKNPLTIIARRFSDEARVICFDEFFVSDITDAMILGTLMEELFKNGVTLVA
TSNIVPDGLYKDGLQRARFLPAIALIKQNTDIVNVDSGVDYRLRHLEQAELFHFPLNEVAQESLRKSFKALTPDCAETIE
NDVLMIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLISGVEQMDVATDDIARRFINMVDEFYDRNVK
LIISAEVELKDLYTGGRLMFEFQRTLSRLLEMQSHEFLSRAHRA
>Mature_363_residues
TPLERYQADLKRPDFFHDAAQENAVRHLQRLYDDLIAAHDSKPGLFGKLFGKKEQTLVKGLYFWGGVGRGKTYLVDTFFD
ALPFQDKVRTHFHRFMKRVHEEMKTLKGEKNPLTIIARRFSDEARVICFDEFFVSDITDAMILGTLMEELFKNGVTLVAT
SNIVPDGLYKDGLQRARFLPAIALIKQNTDIVNVDSGVDYRLRHLEQAELFHFPLNEVAQESLRKSFKALTPDCAETIEN
DVLMIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLISGVEQMDVATDDIARRFINMVDEFYDRNVKL
IISAEVELKDLYTGGRLMFEFQRTLSRLLEMQSHEFLSRAHRA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=407, Percent_Identity=36.3636363636364, Blast_Score=250, Evalue=1e-66,
Organism=Escherichia coli, GI1789627, Length=373, Percent_Identity=51.2064343163539, Blast_Score=355, Evalue=4e-99,
Organism=Caenorhabditis elegans, GI17505769, Length=342, Percent_Identity=32.4561403508772, Blast_Score=193, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6320783, Length=407, Percent_Identity=29.2383292383292, Blast_Score=160, Evalue=4e-40,
Organism=Drosophila melanogaster, GI20129913, Length=350, Percent_Identity=35.7142857142857, Blast_Score=194, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42173; Mature: 42042

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLERYQADLKRPDFFHDAAQENAVRHLQRLYDDLIAAHDSKPGLFGKLFGKKEQTLVK
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHH
GLYFWGGVGRGKTYLVDTFFDALPFQDKVRTHFHRFMKRVHEEMKTLKGEKNPLTIIARR
HHHHHCCCCCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
FSDEARVICFDEFFVSDITDAMILGTLMEELFKNGVTLVATSNIVPDGLYKDGLQRARFL
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH
PAIALIKQNTDIVNVDSGVDYRLRHLEQAELFHFPLNEVAQESLRKSFKALTPDCAETIE
HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHC
NDVLMIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLISGVEQMDVAT
CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH
DDIARRFINMVDEFYDRNVKLIISAEVELKDLYTGGRLMFEFQRTLSRLLEMQSHEFLSR
HHHHHHHHHHHHHHHCCCEEEEEEECEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AHRA
HCCC
>Mature Secondary Structure 
TPLERYQADLKRPDFFHDAAQENAVRHLQRLYDDLIAAHDSKPGLFGKLFGKKEQTLVK
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHH
GLYFWGGVGRGKTYLVDTFFDALPFQDKVRTHFHRFMKRVHEEMKTLKGEKNPLTIIARR
HHHHHCCCCCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
FSDEARVICFDEFFVSDITDAMILGTLMEELFKNGVTLVATSNIVPDGLYKDGLQRARFL
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH
PAIALIKQNTDIVNVDSGVDYRLRHLEQAELFHFPLNEVAQESLRKSFKALTPDCAETIE
HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHC
NDVLMIENREIRALRTCDDVAWFDFRELCDGPRSQNDYIELGKIFHAVLISGVEQMDVAT
CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH
DDIARRFINMVDEFYDRNVKLIISAEVELKDLYTGGRLMFEFQRTLSRLLEMQSHEFLSR
HHHHHHHHHHHHHHHCCCEEEEEEECEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AHRA
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]