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The map label for this gene is yciR [C]

Identifier: 66047287

GI number: 66047287

Start: 4842374

End: 4844491

Strand: Direct

Name: yciR [C]

Synonym: Psyr_4060

Alternate gene names: 66047287

Gene position: 4842374-4844491 (Clockwise)

Preceding gene: 66047286

Following gene: 66047288

Centisome position: 79.47

GC content: 59.82

Gene sequence:

>2118_bases
GTGCGGGCCTGGTTTTTCGAGGGTCATGAGGCGATATGCCCTCCGACACGAACTAAGGAACGGCCATTGAAGCTGGAACT
CAAGAACAGCCTGTCGGTAAAGCTGCTGCGCGTTGTGCTGCTTTCGGCGCTTCTGGTGGGCGTCCTGCTCAGTTGTGCGC
AAATCATCTTCGACGCCTACAAGACACGTCAGGCCGTGGCGAGCGATGCCGAGCGAATTCTCGGCATGTTCCGCGATCCT
TCGACACAGGCCGTCTACAGCCTGGACCGCGAGATGGGCATGCAGGTCATCGAAGGCCTGTTCCAGGATGACTCGGTACG
CATGGCGTCCATAGGGCACCCCAATGAAAGCCTGCTGGCCGAGAAAGACCGGCCGCTGAAAGACTCCCCCACCCGGTGGC
TGACAGACCTCATCCTCGGCCAGGAGCGCAGCTTCACCACTCAACTGGTAGGCCGCAGCCCCTACAGCGAGTATTACGGC
GACCTGCGCATCACTCTCGACACTGCCAATTACGGCGAAAGCTTTCTGGTCAATGCCGGCATCATCTTTGTCGCCGGCGT
GCTGCGTGCGCTGGCAATGGGGCTGGTGCTGTATCTGGTCTATCACTGGCTGCTGACCAAGCCGCTGTCAAAGATCATCG
AGCACCTGATCGCGATCAACCCCGACCGCCCCAGCGAACACCAATTGCCGTTGCTCAAAGGCCACGAGAAAAACGAACTG
GGGATCTGGGTCAACACCGCCAACCAATTGCTGGCCTCCATCGAGCGCCACACTTATCTGCGCCATGAGGCCGAGAACAA
TCTGCAGCGCATGGCGCAATACGATTTCCTCACCGGTCTGCCCAATCGACTTCAGTTGCAGACCGGGCTGGACAGGATTC
TGGAAGATGCGGGGCGCCAGCAACACAGAGTGGCGGTTCTTTGCGTGGGTCTGGATGACTTCAAGGGCATCAACGAACAG
TTCAGCTACCAGTCCGGCGATCAATTACTGCTCGCACTCGCTGACCGCCTGCGCGCGCACAGCGTACTGCTCGGCGCACT
GGCGCGCCTGGGCGGCGACCAGTTCGCGCTGGTTCAGTCCAACATCGAACAGCCCTACGAGGCAGCAGAGCTGGCGCAGA
ATATTCTCGATGAGCTGGAGGCACCGTTCATTGTCGGTGACCAGCAGATTCGACTGCGGGCAACCATCGGCATCACGCTG
TTTCCCGAAGACGGCGACAGCACCGAGAAACTGCTGCAGAAAGCCGAGCAGACCATGACGCTGGCCAAAGCCCGCTCGCG
TAACCGGTATCAGTTCTACATCGCCAGCGTGGACAGCGAAATGCGCCGCCGCCGCGAACTTGAAAAAGACCTGCGCGAAG
CCTTGCCACGCAATCAGCTGTACCTGGTCTATCAACCGCAGATCAGCTACCGCGATCACCGTATCGTCGGAGTGGAAGCA
CTGATCCGCTGGCAGCATCCGGAGCATGGCCTGGTGCCGCCGGACGTATTCATCCCGCTGGCCGAACAGAACGGCACGAT
CATCGTCATCGGAGAGTGGGTGCTGGATCAGGCCTGCCGTCAGCTGCGCGAATGGCTCGATCAGGGTTTCACCGATTTGC
GCATGGCCGTCAACCTGTCGACCGTGCAGCTGCATCACGCGGAACTGCCCCGCGTGGTCAACAACCTGCTGCAGATCTAT
CGCTTGCCACTGCGCAGCCTGGAACTGGAAGTGACCGAAACCGGGCTGATGGAAGATATCAACACCGCCGCCCAGCACCT
GTTGAGCTTGCGACGCTCCGGCGCCTTGATTGCCATCGATGACTTCGGCACCGGCTACTCATCGCTGAGTTACCTGAAAA
GCCTGCCGCTGGACAAGATCAAGATTGACCGCAGCTTCGTGCAGGACCTGATCGATGACGACGATGACGCTACTATCGTG
CGAGCCATTATCCAGCTGGGCAAAAGCCTGGGCATGCAAGTGATTGCCGAAGGTGTGGAGACCGTCGAGCAGGAGGCCTA
TGTCGTGACCGAGGGCTGTCACGAAGGCCAGGGCTATCTGTACAGCAAGCCGCTGCCGGGTCGCGAACTGCTGGCTTATC
TCAAGCAGTCGCGTCAGGACCACGCCGCCAGTCTGTGA

Upstream 100 bases:

>100_bases
GTTACCTAACTGGCCACCCGACGCATTGAGGTGGCTTTGGCCAGCAGGTGCAAGGAACGCGAAGATCAGCCAAGCGTACC
GGTTGTGACAAGGTCACGGC

Downstream 100 bases:

>100_bases
GCCGATTTGCATGCTCCCGGCCATTCATCTCATCTTGAAACCGACTGTTACAACCTGCCGAATGCCTGAACACGCCCACA
CAGGCGTTTTGCCTTTACAT

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 705

Protein sequence:

>705_residues
MRAWFFEGHEAICPPTRTKERPLKLELKNSLSVKLLRVVLLSALLVGVLLSCAQIIFDAYKTRQAVASDAERILGMFRDP
STQAVYSLDREMGMQVIEGLFQDDSVRMASIGHPNESLLAEKDRPLKDSPTRWLTDLILGQERSFTTQLVGRSPYSEYYG
DLRITLDTANYGESFLVNAGIIFVAGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLIAINPDRPSEHQLPLLKGHEKNEL
GIWVNTANQLLASIERHTYLRHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQHRVAVLCVGLDDFKGINEQ
FSYQSGDQLLLALADRLRAHSVLLGALARLGGDQFALVQSNIEQPYEAAELAQNILDELEAPFIVGDQQIRLRATIGITL
FPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRIVGVEA
LIRWQHPEHGLVPPDVFIPLAEQNGTIIVIGEWVLDQACRQLREWLDQGFTDLRMAVNLSTVQLHHAELPRVVNNLLQIY
RLPLRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDRSFVQDLIDDDDDATIV
RAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQGYLYSKPLPGRELLAYLKQSRQDHAASL

Sequences:

>Translated_705_residues
MRAWFFEGHEAICPPTRTKERPLKLELKNSLSVKLLRVVLLSALLVGVLLSCAQIIFDAYKTRQAVASDAERILGMFRDP
STQAVYSLDREMGMQVIEGLFQDDSVRMASIGHPNESLLAEKDRPLKDSPTRWLTDLILGQERSFTTQLVGRSPYSEYYG
DLRITLDTANYGESFLVNAGIIFVAGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLIAINPDRPSEHQLPLLKGHEKNEL
GIWVNTANQLLASIERHTYLRHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQHRVAVLCVGLDDFKGINEQ
FSYQSGDQLLLALADRLRAHSVLLGALARLGGDQFALVQSNIEQPYEAAELAQNILDELEAPFIVGDQQIRLRATIGITL
FPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRIVGVEA
LIRWQHPEHGLVPPDVFIPLAEQNGTIIVIGEWVLDQACRQLREWLDQGFTDLRMAVNLSTVQLHHAELPRVVNNLLQIY
RLPLRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDRSFVQDLIDDDDDATIV
RAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQGYLYSKPLPGRELLAYLKQSRQDHAASL
>Mature_705_residues
MRAWFFEGHEAICPPTRTKERPLKLELKNSLSVKLLRVVLLSALLVGVLLSCAQIIFDAYKTRQAVASDAERILGMFRDP
STQAVYSLDREMGMQVIEGLFQDDSVRMASIGHPNESLLAEKDRPLKDSPTRWLTDLILGQERSFTTQLVGRSPYSEYYG
DLRITLDTANYGESFLVNAGIIFVAGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLIAINPDRPSEHQLPLLKGHEKNEL
GIWVNTANQLLASIERHTYLRHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQHRVAVLCVGLDDFKGINEQ
FSYQSGDQLLLALADRLRAHSVLLGALARLGGDQFALVQSNIEQPYEAAELAQNILDELEAPFIVGDQQIRLRATIGITL
FPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRIVGVEA
LIRWQHPEHGLVPPDVFIPLAEQNGTIIVIGEWVLDQACRQLREWLDQGFTDLRMAVNLSTVQLHHAELPRVVNNLLQIY
RLPLRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDRSFVQDLIDDDDDATIV
RAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQGYLYSKPLPGRELLAYLKQSRQDHAASL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=442, Percent_Identity=36.1990950226244, Blast_Score=275, Evalue=7e-75,
Organism=Escherichia coli, GI87081921, Length=439, Percent_Identity=35.0797266514806, Blast_Score=263, Evalue=3e-71,
Organism=Escherichia coli, GI226510982, Length=648, Percent_Identity=28.5493827160494, Blast_Score=232, Evalue=8e-62,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=36.5461847389558, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI87081743, Length=256, Percent_Identity=35.15625, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI87081980, Length=259, Percent_Identity=33.5907335907336, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1788502, Length=267, Percent_Identity=34.0823970037453, Blast_Score=150, Evalue=4e-37,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=34.7280334728033, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=34.5238095238095, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI1787055, Length=498, Percent_Identity=25.5020080321285, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1788849, Length=247, Percent_Identity=34.0080971659919, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI87082096, Length=253, Percent_Identity=32.0158102766798, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788956, Length=178, Percent_Identity=31.4606741573034, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=34.1040462427746, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI145693134, Length=199, Percent_Identity=29.6482412060301, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=27.0588235294118, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1788381, Length=408, Percent_Identity=24.7549019607843, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=31.1258278145695, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787410, Length=115, Percent_Identity=32.1739130434783, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 79741; Mature: 79741

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAWFFEGHEAICPPTRTKERPLKLELKNSLSVKLLRVVLLSALLVGVLLSCAQIIFDAY
CCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTRQAVASDAERILGMFRDPSTQAVYSLDREMGMQVIEGLFQDDSVRMASIGHPNESLLA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHC
EKDRPLKDSPTRWLTDLILGQERSFTTQLVGRSPYSEYYGDLRITLDTANYGESFLVNAG
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCCCEEEEEECCCCCCCHHHHHH
IIFVAGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLIAINPDRPSEHQLPLLKGHEKNEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
GIWVNTANQLLASIERHTYLRHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQ
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
QHRVAVLCVGLDDFKGINEQFSYQSGDQLLLALADRLRAHSVLLGALARLGGDQFALVQS
CCCEEEEEEECHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHH
NIEQPYEAAELAQNILDELEAPFIVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMT
HCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHH
LAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRIVGVEA
HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEHHH
LIRWQHPEHGLVPPDVFIPLAEQNGTIIVIGEWVLDQACRQLREWLDQGFTDLRMAVNLS
HHEECCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHEEEH
TVQLHHAELPRVVNNLLQIYRLPLRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAID
HEEEHHHHHHHHHHHHHHHHHCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DFGTGYSSLSYLKSLPLDKIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVE
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TVEQEAYVVTEGCHEGQGYLYSKPLPGRELLAYLKQSRQDHAASL
HHHHCCEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRAWFFEGHEAICPPTRTKERPLKLELKNSLSVKLLRVVLLSALLVGVLLSCAQIIFDAY
CCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTRQAVASDAERILGMFRDPSTQAVYSLDREMGMQVIEGLFQDDSVRMASIGHPNESLLA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHC
EKDRPLKDSPTRWLTDLILGQERSFTTQLVGRSPYSEYYGDLRITLDTANYGESFLVNAG
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCCCEEEEEECCCCCCCHHHHHH
IIFVAGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLIAINPDRPSEHQLPLLKGHEKNEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
GIWVNTANQLLASIERHTYLRHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQ
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
QHRVAVLCVGLDDFKGINEQFSYQSGDQLLLALADRLRAHSVLLGALARLGGDQFALVQS
CCCEEEEEEECHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHH
NIEQPYEAAELAQNILDELEAPFIVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMT
HCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHH
LAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRIVGVEA
HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEHHH
LIRWQHPEHGLVPPDVFIPLAEQNGTIIVIGEWVLDQACRQLREWLDQGFTDLRMAVNLS
HHEECCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHEEEH
TVQLHHAELPRVVNNLLQIYRLPLRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAID
HEEEHHHHHHHHHHHHHHHHHCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DFGTGYSSLSYLKSLPLDKIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVE
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TVEQEAYVVTEGCHEGQGYLYSKPLPGRELLAYLKQSRQDHAASL
HHHHCCEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]