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The map label for this gene is hcp1 [H]

Identifier: 66047266

GI number: 66047266

Start: 4825542

End: 4826030

Strand: Direct

Name: hcp1 [H]

Synonym: Psyr_4039

Alternate gene names: 66047266

Gene position: 4825542-4826030 (Clockwise)

Preceding gene: 66047265

Following gene: 66047267

Centisome position: 79.19

GC content: 52.15

Gene sequence:

>489_bases
ATGGCATTTGACGCATATATCAAAATCGAAGGCATTCCAGGCGAAGCGCTGGATGATCGCTACAAGGACTGTATCGAGAT
CACCGGGTATGGTTTCGGCATGCACCAAAGTACCTCCGCCACGGCGAGTTCTTCAGGAGGCGCCTCGTCGGGTCGGACGT
CCTTGAGTGATTTCACGTTCACCAAATCACTGGACAAGTCGAGCTGCAAGCTCATGGAAAGTTTGTGCGCGGGCAAGCAC
CTGAAGGAAGTCGTCTTGTCACTGCATCGTGCAGGCGGAGACAAGGTCAAATACTTTGAAGTGCTGCTGGAAGAAGTCAT
CATTTCCAACTACACCCAGCATGCCAACGATGGCATCCCCAGCGAGACCATCAGCCTCAACTACGGAAAAATAAAAACCA
CCTACACCCAGCAGAAAAGATCTGACGGTGCCGGTGGAGGGAATGTCTCGGGTGGCTGGAACCGTATCAACAACAAGGTC
TATTCCTGA

Upstream 100 bases:

>100_bases
GGTTGCTGATCACCATGTTCGATAAAAATAAAGATTACGCTGCTGAAACATATGGATACCTGTATGCAACGTAATACCGA
TCGAACGTGGAGTTTTAAAC

Downstream 100 bases:

>100_bases
CGTCTTGAACGCTCACGCATAAAACGTCACGACATGATCAAGGAAGGACTATGGCACGGCCATTTTTTACTGCTGCCTGG
GCGGCTTCGCAACATATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MAFDAYIKIEGIPGEALDDRYKDCIEITGYGFGMHQSTSATASSSGGASSGRTSLSDFTFTKSLDKSSCKLMESLCAGKH
LKEVVLSLHRAGGDKVKYFEVLLEEVIISNYTQHANDGIPSETISLNYGKIKTTYTQQKRSDGAGGGNVSGGWNRINNKV
YS

Sequences:

>Translated_162_residues
MAFDAYIKIEGIPGEALDDRYKDCIEITGYGFGMHQSTSATASSSGGASSGRTSLSDFTFTKSLDKSSCKLMESLCAGKH
LKEVVLSLHRAGGDKVKYFEVLLEEVIISNYTQHANDGIPSETISLNYGKIKTTYTQQKRSDGAGGGNVSGGWNRINNKV
YS
>Mature_161_residues
AFDAYIKIEGIPGEALDDRYKDCIEITGYGFGMHQSTSATASSSGGASSGRTSLSDFTFTKSLDKSSCKLMESLCAGKHL
KEVVLSLHRAGGDKVKYFEVLLEEVIISNYTQHANDGIPSETISLNYGKIKTTYTQQKRSDGAGGGNVSGGWNRINNKVY
S

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17480; Mature: 17348

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDAYIKIEGIPGEALDDRYKDCIEITGYGFGMHQSTSATASSSGGASSGRTSLSDFTF
CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
TKSLDKSSCKLMESLCAGKHLKEVVLSLHRAGGDKVKYFEVLLEEVIISNYTQHANDGIP
HHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCCC
SETISLNYGKIKTTYTQQKRSDGAGGGNVSGGWNRINNKVYS
CCEEEECCCEEEEHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
>Mature Secondary Structure 
AFDAYIKIEGIPGEALDDRYKDCIEITGYGFGMHQSTSATASSSGGASSGRTSLSDFTF
CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
TKSLDKSSCKLMESLCAGKHLKEVVLSLHRAGGDKVKYFEVLLEEVIISNYTQHANDGIP
HHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCCC
SETISLNYGKIKTTYTQQKRSDGAGGGNVSGGWNRINNKVYS
CCEEEECCCEEEEHHHHHHHCCCCCCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]