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The map label for this gene is 66047212

Identifier: 66047212

GI number: 66047212

Start: 4743013

End: 4744278

Strand: Reverse

Name: 66047212

Synonym: Psyr_3985

Alternate gene names: NA

Gene position: 4744278-4743013 (Counterclockwise)

Preceding gene: 66047213

Following gene: 66047211

Centisome position: 77.86

GC content: 58.85

Gene sequence:

>1266_bases
ATGACGCCCCTGCGTTCTCTTTTGCAAAGCGGCTGTCTGAAGATCGCCACCACTCTGGTTCTGCTCCTGTCAGGAGCGCA
ATGCCTGTGGGCAGCAGACATGCCTGAAGGTTTCGCCAAGGGCGTGACCGGCGGAGGCTCCGCGGCTGCCGTGCATCCCT
CCACGCGGGATGAACTTCGATCAGCACTCTGCTCGTCGCATGACTCACACGGGGCCTGCACCGATGACACACCCCGAGTG
ATTGTCCTGGACCACACATTCGACTTCCGCGCGAGCGTGATTACCAACGGCAGTACCACAACCACCGAACCTGGTTGCGT
CGTGAAACCGTGCCCGCAGGGTGGTGAGCAACTTGCACTGAATGGTGCCAACGACTTCTGCCAATCAAGGCCGCCCGTCA
TGGTGACCTACGACAACGCGGGACTGAAACCACTGAAAGTCGGCTCCAACAAGACATTGATCGGGCTTGGCGACAAGGCA
GGCATTCAGGGCGCTGGACTGTTCATTGGCGACGGTGCGCATAACGTGATCGTTCGTAACCTGACCCTTTCGGATATCAA
CCCGCATGTCGTATGGGGCGGCGATGCGCTGACCCTGAACAAGGCCGATGGCGTGTGGATCGATCACAACACCTTTGCGC
GGATCGGCAGACAGATGATCGTGACAGGCTGGGGCACTGCTTCACACGTCACCATTTCCAGCAATGAATTCGACGGCCGT
ACGCCTTACTCGTCTACCTGCGATGGCCATCATTATTGGGTCTGGCTGTTCCTCGGCAGTCAGGACACGCTGACGCTGTC
GAGAAACTACATACACGACACCTCCGGCAGAGCACCTCATTCCGGCGGGATGAAAAATGCGCAAATCCGCGCTCAACTGG
TCAACAACGTCTTTCAGCGCATGACCTACCAAGGCGCAATCATGTCGCGGACCTCATCTTCACAGTTGCTGGTAGAGGGA
AACGACTTCGAAAACGTAGCCCACCCACTGTTCAACGATACGGATCAGCCAGGTACGGCATTCGCTTTGTTCGAGCCGGT
TTCGACGGCTGCAAACAACGTGTGCATGAGCGTGATCGGCAGGCCTTGTGTGGCGAATCAGCAACAGGATAGCGGCGACG
ACTATCGCCCGCAGGATGCCTCTGTCTTGCAGGCGTTTCGCGAGTATCGGCAGTACCTGGTGGCGCCGGTTTCGGCGCAA
GAGGCCAAGGCGCGGGTGCCGGGAGAGGCGGGGGTGGGTAAGGCCAGTGCCGGGCTGCTGCAATGA

Upstream 100 bases:

>100_bases
AGGCTGACCAACACCATGGAACCGGAGCAGGCCAGGCCGCAGTCCGTTTAGCATCCAGATTGTCCCGCGATTCCCGCGGG
CATGACTGGAAGCTCAACCG

Downstream 100 bases:

>100_bases
CTTCGATGTTTGAGTTGCATTCACCGCTACCCAATCGTTTTACTATCACGCAATACCGCGCCTTCTAACACCTAAAAAGG
CCCGATCAGTGAGTCAGGGG

Product: Pectate lyase/Amb allergen

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MTPLRSLLQSGCLKIATTLVLLLSGAQCLWAADMPEGFAKGVTGGGSAAAVHPSTRDELRSALCSSHDSHGACTDDTPRV
IVLDHTFDFRASVITNGSTTTTEPGCVVKPCPQGGEQLALNGANDFCQSRPPVMVTYDNAGLKPLKVGSNKTLIGLGDKA
GIQGAGLFIGDGAHNVIVRNLTLSDINPHVVWGGDALTLNKADGVWIDHNTFARIGRQMIVTGWGTASHVTISSNEFDGR
TPYSSTCDGHHYWVWLFLGSQDTLTLSRNYIHDTSGRAPHSGGMKNAQIRAQLVNNVFQRMTYQGAIMSRTSSSQLLVEG
NDFENVAHPLFNDTDQPGTAFALFEPVSTAANNVCMSVIGRPCVANQQQDSGDDYRPQDASVLQAFREYRQYLVAPVSAQ
EAKARVPGEAGVGKASAGLLQ

Sequences:

>Translated_421_residues
MTPLRSLLQSGCLKIATTLVLLLSGAQCLWAADMPEGFAKGVTGGGSAAAVHPSTRDELRSALCSSHDSHGACTDDTPRV
IVLDHTFDFRASVITNGSTTTTEPGCVVKPCPQGGEQLALNGANDFCQSRPPVMVTYDNAGLKPLKVGSNKTLIGLGDKA
GIQGAGLFIGDGAHNVIVRNLTLSDINPHVVWGGDALTLNKADGVWIDHNTFARIGRQMIVTGWGTASHVTISSNEFDGR
TPYSSTCDGHHYWVWLFLGSQDTLTLSRNYIHDTSGRAPHSGGMKNAQIRAQLVNNVFQRMTYQGAIMSRTSSSQLLVEG
NDFENVAHPLFNDTDQPGTAFALFEPVSTAANNVCMSVIGRPCVANQQQDSGDDYRPQDASVLQAFREYRQYLVAPVSAQ
EAKARVPGEAGVGKASAGLLQ
>Mature_420_residues
TPLRSLLQSGCLKIATTLVLLLSGAQCLWAADMPEGFAKGVTGGGSAAAVHPSTRDELRSALCSSHDSHGACTDDTPRVI
VLDHTFDFRASVITNGSTTTTEPGCVVKPCPQGGEQLALNGANDFCQSRPPVMVTYDNAGLKPLKVGSNKTLIGLGDKAG
IQGAGLFIGDGAHNVIVRNLTLSDINPHVVWGGDALTLNKADGVWIDHNTFARIGRQMIVTGWGTASHVTISSNEFDGRT
PYSSTCDGHHYWVWLFLGSQDTLTLSRNYIHDTSGRAPHSGGMKNAQIRAQLVNNVFQRMTYQGAIMSRTSSSQLLVEGN
DFENVAHPLFNDTDQPGTAFALFEPVSTAANNVCMSVIGRPCVANQQQDSGDDYRPQDASVLQAFREYRQYLVAPVSAQE
AKARVPGEAGVGKASAGLLQ

Specific function: Unknown

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44830; Mature: 44699

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLRSLLQSGCLKIATTLVLLLSGAQCLWAADMPEGFAKGVTGGGSAAAVHPSTRDELR
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCCCCEEEECCCCHHHHH
SALCSSHDSHGACTDDTPRVIVLDHTFDFRASVITNGSTTTTEPGCVVKPCPQGGEQLAL
HHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCCEEEE
NGANDFCQSRPPVMVTYDNAGLKPLKVGSNKTLIGLGDKAGIQGAGLFIGDGAHNVIVRN
CCCHHHHHCCCCEEEEECCCCCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCEEEEEE
LTLSDINPHVVWGGDALTLNKADGVWIDHNTFARIGRQMIVTGWGTASHVTISSNEFDGR
EEECCCCCEEEECCCEEEEECCCCEEEECHHHHHCCCEEEEEECCCCEEEEEECCCCCCC
TPYSSTCDGHHYWVWLFLGSQDTLTLSRNYIHDTSGRAPHSGGMKNAQIRAQLVNNVFQR
CCCCCCCCCCEEEEEEEECCCCEEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
MTYQGAIMSRTSSSQLLVEGNDFENVAHPLFNDTDQPGTAFALFEPVSTAANNVCMSVIG
HHHCCHHEECCCCCEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHC
RPCVANQQQDSGDDYRPQDASVLQAFREYRQYLVAPVSAQEAKARVPGEAGVGKASAGLL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCC
Q
C
>Mature Secondary Structure 
TPLRSLLQSGCLKIATTLVLLLSGAQCLWAADMPEGFAKGVTGGGSAAAVHPSTRDELR
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCCCCEEEECCCCHHHHH
SALCSSHDSHGACTDDTPRVIVLDHTFDFRASVITNGSTTTTEPGCVVKPCPQGGEQLAL
HHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCCEEEE
NGANDFCQSRPPVMVTYDNAGLKPLKVGSNKTLIGLGDKAGIQGAGLFIGDGAHNVIVRN
CCCHHHHHCCCCEEEEECCCCCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCEEEEEE
LTLSDINPHVVWGGDALTLNKADGVWIDHNTFARIGRQMIVTGWGTASHVTISSNEFDGR
EEECCCCCEEEECCCEEEEECCCCEEEECHHHHHCCCEEEEEECCCCEEEEEECCCCCCC
TPYSSTCDGHHYWVWLFLGSQDTLTLSRNYIHDTSGRAPHSGGMKNAQIRAQLVNNVFQR
CCCCCCCCCCEEEEEEEECCCCEEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
MTYQGAIMSRTSSSQLLVEGNDFENVAHPLFNDTDQPGTAFALFEPVSTAANNVCMSVIG
HHHCCHHEECCCCCEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHC
RPCVANQQQDSGDDYRPQDASVLQAFREYRQYLVAPVSAQEAKARVPGEAGVGKASAGLL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA