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The map label for this gene is capB

Identifier: 66047111

GI number: 66047111

Start: 4624898

End: 4625107

Strand: Direct

Name: capB

Synonym: Psyr_3884

Alternate gene names: 66047111

Gene position: 4624898-4625107 (Clockwise)

Preceding gene: 66047108

Following gene: 66047113

Centisome position: 75.9

GC content: 47.14

Gene sequence:

>210_bases
ATGTCCAATCGCCAAACTGGTACCGTTAAGTGGTTCAACGATGAAAAAGGCTTCGGCTTCATCACTCCACAATCCGGTGA
CGATCTGTTCGTGCACTTCAAAGCTATCCAATCCGACGGCTTCAAAAGCCTGAAAGAAGGCCAACAGGTTTCTTTCATCG
CTACCCGCGGTCAGAAAGGCATGCAAGCTGAAGAAGTTCAAGTTATCTAA

Upstream 100 bases:

>100_bases
TTTCGATCCAACCATCTCCATGAATTTTCCAGCTCTTTGCACTCAGTCTCGGCCAGGGCTCTTCCTACGCCGCAGTTAAC
TTTGTCCAAGGAGATTTACT

Downstream 100 bases:

>100_bases
CTTGTACTGATTCGCTTAAAAACCCCGCCCTTAAAAGCGGGGTTTTTTATTGTCCGTCTTTTGACCTCTCGCGGCTTGAG
CACCTCCTGCACAGCTGACC

Product: cold-shock protein, DNA-binding

Products: NA

Alternate protein names: C8.0; Cold acclimation protein B

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSNRQTGTVKWFNDEKGFGFITPQSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKGMQAEEVQVI

Sequences:

>Translated_69_residues
MSNRQTGTVKWFNDEKGFGFITPQSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKGMQAEEVQVI
>Mature_68_residues
SNRQTGTVKWFNDEKGFGFITPQSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKGMQAEEVQVI

Specific function: Affects cell viability at low temperatures

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=60, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=58.5714285714286, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=55.7142857142857, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=55.0724637681159, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=62.2950819672131, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=60.9375, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1787107, Length=63, Percent_Identity=50.7936507936508, Blast_Score=71, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAPB_PSEFR (P0A106)

Other databases:

- EMBL:   U62986
- ProteinModelPortal:   P0A106
- SMR:   P0A106
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7727; Mature: 7596

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRQTGTVKWFNDEKGFGFITPQSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKG
CCCCCCCEEEEECCCCCCEEECCCCCCEEEEEEEEECCCCCCHHHCCCEEEEEEECCCCC
MQAEEVQVI
CCCCEEEEC
>Mature Secondary Structure 
SNRQTGTVKWFNDEKGFGFITPQSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKG
CCCCCCEEEEECCCCCCEEECCCCCCEEEEEEEEECCCCCCHHHCCCEEEEEEECCCCC
MQAEEVQVI
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9393697