Click here to switch to the map view.

The map label for this gene is dcd [H]

Identifier: 66047110

GI number: 66047110

Start: 4624012

End: 4624578

Strand: Reverse

Name: dcd [H]

Synonym: Psyr_3883

Alternate gene names: 66047110

Gene position: 4624578-4624012 (Counterclockwise)

Preceding gene: 66047112

Following gene: 66047109

Centisome position: 75.89

GC content: 57.67

Gene sequence:

>567_bases
ATGAGCATCAAATCGGACAAGTGGATTCGCCGCATGGCGCAGGAACACGGGATGATCGAGCCCTTCGTAGAGCGCCAGGT
ACGTGGCGAAGGTGCTGATCGGGTGATCTCTTTCGGGGTGTCCAGTTACGGCTACGACGTGCGTTGCGCCGACGAATTCA
AGGTGTTCACCAACATCAATTCGGCCACGGTCGATCCGAAAAACTTCGATGAAAAAAGCTTCGTCGATATCAAGAGCGAC
GTATGCATCATCCCTCCCAACTCGTTCGCACTGGCGCGCACCGTCGAATATTTCCGCATTCCGCGTAACGTTCTGACCAT
CTGCCTGGGCAAGAGCACCTACGCGCGCTGCGGCATCATCGTCAATGTCACGCCGCTCGAGCCTGAGTGGGAAGGCCATG
TGACGCTGGAGTTTTCCAACACCACGACACTGCCGGCCAAGATCTACGCCAACGAGGGTGTGGCGCAGATGCTGTTCCTG
GAGTCCGATGAGGAGTGTGAAGTCTCCTACAAGGATCGGGGTGGCAAGTACCAGGGCCAGCGTGGCGTCACCCTGCCGCG
TACCTGA

Upstream 100 bases:

>100_bases
GGCCGGTCACGCAAACTCGCGATCTGTTGCCTTTGAACCGTCGGCCTCAGCCCGGTAAGATGCCGGATATCTTTTTCACC
TCGCTATTCAGGACACCGCC

Downstream 100 bases:

>100_bases
TTTGCGGTCCAGGTGACTAGTGGAATTGAATTAATACTCTATTTCGCACTCTATCTGCTCACATGCTTTCGCATAATTCA
TTACGTGCGACGGCCTTTGA

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase [H]

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSIKSDKWIRRMAQEHGMIEPFVERQVRGEGADRVISFGVSSYGYDVRCADEFKVFTNINSATVDPKNFDEKSFVDIKSD
VCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTTLPAKIYANEGVAQMLFL
ESDEECEVSYKDRGGKYQGQRGVTLPRT

Sequences:

>Translated_188_residues
MSIKSDKWIRRMAQEHGMIEPFVERQVRGEGADRVISFGVSSYGYDVRCADEFKVFTNINSATVDPKNFDEKSFVDIKSD
VCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTTLPAKIYANEGVAQMLFL
ESDEECEVSYKDRGGKYQGQRGVTLPRT
>Mature_187_residues
SIKSDKWIRRMAQEHGMIEPFVERQVRGEGADRVISFGVSSYGYDVRCADEFKVFTNINSATVDPKNFDEKSFVDIKSDV
CIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTTLPAKIYANEGVAQMLFLE
SDEECEVSYKDRGGKYQGQRGVTLPRT

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011962
- InterPro:   IPR008180 [H]

Pfam domain/function: PF00692 dUTPase [H]

EC number: =3.5.4.13 [H]

Molecular weight: Translated: 21248; Mature: 21117

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKSDKWIRRMAQEHGMIEPFVERQVRGEGADRVISFGVSSYGYDVRCADEFKVFTNIN
CCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCEEEEECCC
SATVDPKNFDEKSFVDIKSDVCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGII
CCCCCCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHCCHHHEEEEECCCCHHHCEEE
VNVTPLEPEWEGHVTLEFSNTTTLPAKIYANEGVAQMLFLESDEECEVSYKDRGGKYQGQ
EEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCC
RGVTLPRT
CCCCCCCC
>Mature Secondary Structure 
SIKSDKWIRRMAQEHGMIEPFVERQVRGEGADRVISFGVSSYGYDVRCADEFKVFTNIN
CCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCEEEEECCC
SATVDPKNFDEKSFVDIKSDVCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGII
CCCCCCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHCCHHHEEEEECCCCHHHCEEE
VNVTPLEPEWEGHVTLEFSNTTTLPAKIYANEGVAQMLFLESDEECEVSYKDRGGKYQGQ
EEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCC
RGVTLPRT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA