| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is fatA [H]
Identifier: 66047091
GI number: 66047091
Start: 4603314
End: 4605749
Strand: Reverse
Name: fatA [H]
Synonym: Psyr_3864
Alternate gene names: 66047091
Gene position: 4605749-4603314 (Counterclockwise)
Preceding gene: 66047092
Following gene: 66047088
Centisome position: 75.58
GC content: 60.43
Gene sequence:
>2436_bases ATGTCCCGTTCGTTAGACACCCTTCTGCGTCCCAGTCTGTTGGCCGTGGCGATCGCCCTGTGCACGCCTCTGACCAGCCC GCTGTCGATGGCGGCGCAGCAGGCCAGCGTGGTTGCCTATGATCTGCCCGCAGGCCCGATGGCCACTACGCTGAATCAGA TCTCCAGCCAGGGTGGCCTGGCATTGAGTCTTGACCCGGCGCTGGTCGCCGGCAAGACCAGCTCGGCGGTGAAAGGCAAT TTCGATGCGGCCACGGCCTTGCGCGAGGCTCTGCGTGGCAGCGGCCTGCAACTGGTGCAGAGCAGCGCCGGGACGTACAC GCTGATGGTCATGGAACAGAACGCCTTGAACCTGTCGGACGTGAACATCAACGCCAACAGCACGCCCCTCGAAGGCTCGG AAGCCGCAGGTTATCGCAGCGAGAACGTCAGCAGTGTCGGCGCGCTGGGTGGCATGCGGCTGCAGGACGCGCCTTATTCC ATCAGCGTAACGCCTCAGGCGCTGCTGAAAAACATCCAGGCCACCTCGCTGGACGATGTCATCAAGCACAACCCGTTCAC CCAGATGTACTCGCCGACCAGCGCCGGTTATGCCAGTGCCGTCAACATTCGAGGCTTCAGCAGCGCGGGCAGCCTGAACA TCGCCAATAATGGCCTGCGTTTCACCAACGGTGCCGACGGCAGCAACTACATGGAAGAGATGGAGCAGTTGGAAGTCATC ACCGGTCTGACCGGCTTCCTGTATGGTCCGGCCTCGCCGGGCGGGCTGGTCAATTACGTGCTCAAGCGCCCGACCTATCA ACGCTACAACAGCGTCACCCTGGGCAATGCCGGGGGTGAGAATTACTACCTGCATGGTGACTTCGGCGGGCCGATCGACA GCGAGGGCAAATTCGCCTATCGCCTCAATGTGCTGACTCAGGATGGCGAAACCGCTGTCGATCTGAACAAGCGTCGCCGC GAGATGATTTCCCTGGCGCTGGACTGGAACGTGTCCGACGACCTGCTGGTGCAGTTCGACGCCTCGCACAAGAAGACCGA AATTCGCGGCCTGACCAGTTACTGGTATTTCGGTGACCAATCCCTGCGCCCCGGCGCGGCATCGCTGGACAACGACAAGC TCTACAGCCAGAAGTGGTCGTTTTCCGATTACGAGTCCGACAAGGCCGGCGTGCGTGCCAAGTGGCGCTTGAACGACACG TTCACCTTGCGCGCGGCCTTCGCTGCCCAGCAGTACACCTCGGAGAACACCTACACCGGGCCGACGGTCTACAGCGCGGG CCTTTACTCGCAGCCGCTGTATGCCTTCGCGCCGATTGAAACCGAAGAAAAGACCGGTTCGCTGTTCCTCGATGCGGCGT TCGATACCGGCTTTATCGGTCACAAGGTCACTGTGGGCTATCAGGGCAATACCTCACGGCAGAAACAGTACGAGGATCAC ATTCCGTACACGCCCGATCAGCCAGGCCCGCAATACACCTCGCCGGTGGGCACGATACCGCTGGACCAGACGCCTCAGGT CGGTAAACCGTCTTACTCCATCGGGCATGGCGACCAGCGCCTGGCCAACAGTTCGGAAAGCAATAACGTCCTGATCGGTG ACGTCATTACTTTCAATGAGCAGTGGTCGGCGATCCTGGGTGTGACCAACACACAGATCAAAACCTACGCCAACGAGTTC GTCTACGCCAAGGCGTTCGGGTCCGCCGAAACCGAGACCACCTACAACGAGAGCAAGACCTCGCCGAACATCTCGCTGGT CTATAAACCGCTGCCGTGGCTGACCACCTACGCGACGTATATAGAAGGCCTGCAATCGGGCGGCGTCGCGCCTGGCGGCA CCGCCAATGCCGGCCAGGCGTTTGCGCCTGAAATCAGCGAACAATACGAAATCGGTGCCAAGGCGACACTGGGCGAAACC CTGCTGACCCTGGCGCTGTTCAACATCGAGAAGCCCAACGGCTACACCACAGGTGCGAACATCTACGTCGTGGACGGACG TCAGGAGAACAACGGCCTGGAATTCAGCGTCACCGGCAAGGTCATCCCGGAACTGACCGTGGTGGGCGGCTTTACCTTGC TCGACCCGAAAATCAAGAAAACCGGTGTCGCGGCGGATGAAGGCAACGTGCCAACCAACGTCGCCAAGCAACTGGCCAAG GTCTATGCCGAATACGACATCAACCCTGTACCAGGCCTGGCCATGACCGGCGGGGCGTTCTACACCGGCAAGCAATACAC CGATCAAAGCAACGAAAACGACCTGCCGTCCTTCACCACCTTCGACGCCGGAGCCCGCTACCGCCTGCGCCTTGCAGAAA ACGACCTGACCCTGCGCGTCAACGTCAGCAACCTGACCAACAAACAATACTGGCTCAACAGCAGCTACCTGGGCGACCCG CGCACCGTCGCGTTTTCGGCACAGCTGGAGTTTTAA
Upstream 100 bases:
>100_bases AGCTGATTCCTGAAACGGAATTATTTTCAATCAGCCCTGTTACTTTCGAGCGTTCGTCCGGCTAACAGGCATTGAGAAGT ATTCCATCAGGAGTTGCCCG
Downstream 100 bases:
>100_bases GGCGAGCCTCACCCACCTGATAACGCAGACCGCCGTGTGACGCAGAGCGTCACGAACTGCATTCCCACGCGGAGCATGGG AACGATAGTCAAAACCGCAG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: OM2 [H]
Number of amino acids: Translated: 811; Mature: 810
Protein sequence:
>811_residues MSRSLDTLLRPSLLAVAIALCTPLTSPLSMAAQQASVVAYDLPAGPMATTLNQISSQGGLALSLDPALVAGKTSSAVKGN FDAATALREALRGSGLQLVQSSAGTYTLMVMEQNALNLSDVNINANSTPLEGSEAAGYRSENVSSVGALGGMRLQDAPYS ISVTPQALLKNIQATSLDDVIKHNPFTQMYSPTSAGYASAVNIRGFSSAGSLNIANNGLRFTNGADGSNYMEEMEQLEVI TGLTGFLYGPASPGGLVNYVLKRPTYQRYNSVTLGNAGGENYYLHGDFGGPIDSEGKFAYRLNVLTQDGETAVDLNKRRR EMISLALDWNVSDDLLVQFDASHKKTEIRGLTSYWYFGDQSLRPGAASLDNDKLYSQKWSFSDYESDKAGVRAKWRLNDT FTLRAAFAAQQYTSENTYTGPTVYSAGLYSQPLYAFAPIETEEKTGSLFLDAAFDTGFIGHKVTVGYQGNTSRQKQYEDH IPYTPDQPGPQYTSPVGTIPLDQTPQVGKPSYSIGHGDQRLANSSESNNVLIGDVITFNEQWSAILGVTNTQIKTYANEF VYAKAFGSAETETTYNESKTSPNISLVYKPLPWLTTYATYIEGLQSGGVAPGGTANAGQAFAPEISEQYEIGAKATLGET LLTLALFNIEKPNGYTTGANIYVVDGRQENNGLEFSVTGKVIPELTVVGGFTLLDPKIKKTGVAADEGNVPTNVAKQLAK VYAEYDINPVPGLAMTGGAFYTGKQYTDQSNENDLPSFTTFDAGARYRLRLAENDLTLRVNVSNLTNKQYWLNSSYLGDP RTVAFSAQLEF
Sequences:
>Translated_811_residues MSRSLDTLLRPSLLAVAIALCTPLTSPLSMAAQQASVVAYDLPAGPMATTLNQISSQGGLALSLDPALVAGKTSSAVKGN FDAATALREALRGSGLQLVQSSAGTYTLMVMEQNALNLSDVNINANSTPLEGSEAAGYRSENVSSVGALGGMRLQDAPYS ISVTPQALLKNIQATSLDDVIKHNPFTQMYSPTSAGYASAVNIRGFSSAGSLNIANNGLRFTNGADGSNYMEEMEQLEVI TGLTGFLYGPASPGGLVNYVLKRPTYQRYNSVTLGNAGGENYYLHGDFGGPIDSEGKFAYRLNVLTQDGETAVDLNKRRR EMISLALDWNVSDDLLVQFDASHKKTEIRGLTSYWYFGDQSLRPGAASLDNDKLYSQKWSFSDYESDKAGVRAKWRLNDT FTLRAAFAAQQYTSENTYTGPTVYSAGLYSQPLYAFAPIETEEKTGSLFLDAAFDTGFIGHKVTVGYQGNTSRQKQYEDH IPYTPDQPGPQYTSPVGTIPLDQTPQVGKPSYSIGHGDQRLANSSESNNVLIGDVITFNEQWSAILGVTNTQIKTYANEF VYAKAFGSAETETTYNESKTSPNISLVYKPLPWLTTYATYIEGLQSGGVAPGGTANAGQAFAPEISEQYEIGAKATLGET LLTLALFNIEKPNGYTTGANIYVVDGRQENNGLEFSVTGKVIPELTVVGGFTLLDPKIKKTGVAADEGNVPTNVAKQLAK VYAEYDINPVPGLAMTGGAFYTGKQYTDQSNENDLPSFTTFDAGARYRLRLAENDLTLRVNVSNLTNKQYWLNSSYLGDP RTVAFSAQLEF >Mature_810_residues SRSLDTLLRPSLLAVAIALCTPLTSPLSMAAQQASVVAYDLPAGPMATTLNQISSQGGLALSLDPALVAGKTSSAVKGNF DAATALREALRGSGLQLVQSSAGTYTLMVMEQNALNLSDVNINANSTPLEGSEAAGYRSENVSSVGALGGMRLQDAPYSI SVTPQALLKNIQATSLDDVIKHNPFTQMYSPTSAGYASAVNIRGFSSAGSLNIANNGLRFTNGADGSNYMEEMEQLEVIT GLTGFLYGPASPGGLVNYVLKRPTYQRYNSVTLGNAGGENYYLHGDFGGPIDSEGKFAYRLNVLTQDGETAVDLNKRRRE MISLALDWNVSDDLLVQFDASHKKTEIRGLTSYWYFGDQSLRPGAASLDNDKLYSQKWSFSDYESDKAGVRAKWRLNDTF TLRAAFAAQQYTSENTYTGPTVYSAGLYSQPLYAFAPIETEEKTGSLFLDAAFDTGFIGHKVTVGYQGNTSRQKQYEDHI PYTPDQPGPQYTSPVGTIPLDQTPQVGKPSYSIGHGDQRLANSSESNNVLIGDVITFNEQWSAILGVTNTQIKTYANEFV YAKAFGSAETETTYNESKTSPNISLVYKPLPWLTTYATYIEGLQSGGVAPGGTANAGQAFAPEISEQYEIGAKATLGETL LTLALFNIEKPNGYTTGANIYVVDGRQENNGLEFSVTGKVIPELTVVGGFTLLDPKIKKTGVAADEGNVPTNVAKQLAKV YAEYDINPVPGLAMTGGAFYTGKQYTDQSNENDLPSFTTFDAGARYRLRLAENDLTLRVNVSNLTNKQYWLNSSYLGDPR TVAFSAQLEF
Specific function: Anguibactin receptor, essential component of the iron uptake system of V.anguillarum [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=714, Percent_Identity=26.0504201680672, Blast_Score=128, Evalue=2e-30, Organism=Escherichia coli, GI1787344, Length=737, Percent_Identity=23.202170963365, Blast_Score=92, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87390; Mature: 87259
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSLDTLLRPSLLAVAIALCTPLTSPLSMAAQQASVVAYDLPAGPMATTLNQISSQGGL CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCE ALSLDPALVAGKTSSAVKGNFDAATALREALRGSGLQLVQSSAGTYTLMVMEQNALNLSD EEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCEEE VNINANSTPLEGSEAAGYRSENVSSVGALGGMRLQDAPYSISVTPQALLKNIQATSLDDV EEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCCEEEEECHHHHHHCCCCCCHHHH IKHNPFTQMYSPTSAGYASAVNIRGFSSAGSLNIANNGLRFTNGADGSNYMEEMEQLEVI HHCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHH TGLTGFLYGPASPGGLVNYVLKRPTYQRYNSVTLGNAGGENYYLHGDFGGPIDSEGKFAY HCCHHEEECCCCCCHHHHHHHCCCCHHHHCCEEEECCCCCCEEEECCCCCCCCCCCCEEE RLNVLTQDGETAVDLNKRRREMISLALDWNVSDDLLVQFDASHKKTEIRGLTSYWYFGDQ EEEEEECCCCEEECHHHHHHEEEEEEEECCCCCCEEEEECCCCCCCHHCEEEEEEEECCC SLRPGAASLDNDKLYSQKWSFSDYESDKAGVRAKWRLNDTFTLRAAFAAQQYTSENTYTG CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEEHHHHHHCCCCCCCC PTVYSAGLYSQPLYAFAPIETEEKTGSLFLDAAFDTGFIGHKVTVGYQGNTSRQKQYEDH CCEEECCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHC IPYTPDQPGPQYTSPVGTIPLDQTPQVGKPSYSIGHGDQRLANSSESNNVLIGDVITFNE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECC QWSAILGVTNTQIKTYANEFVYAKAFGSAETETTYNESKTSPNISLVYKPLPWLTTYATY CCCEEEECCCCHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHH IEGLQSGGVAPGGTANAGQAFAPEISEQYEIGAKATLGETLLTLALFNIEKPNGYTTGAN HHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHEEEECCCCEECCCE IYVVDGRQENNGLEFSVTGKVIPELTVVGGFTLLDPKIKKTGVAADEGNVPTNVAKQLAK EEEECCCCCCCCEEEEECCCCCCEEEEECCEEEECCCHHHCCCCCCCCCCCHHHHHHHHH VYAEYDINPVPGLAMTGGAFYTGKQYTDQSNENDLPSFTTFDAGARYRLRLAENDLTLRV HHHHCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCEEEEE NVSNLTNKQYWLNSSYLGDPRTVAFSAQLEF EECCCCCCEEEECCCCCCCCCEEEEEEEECC >Mature Secondary Structure SRSLDTLLRPSLLAVAIALCTPLTSPLSMAAQQASVVAYDLPAGPMATTLNQISSQGGL CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCE ALSLDPALVAGKTSSAVKGNFDAATALREALRGSGLQLVQSSAGTYTLMVMEQNALNLSD EEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCEEE VNINANSTPLEGSEAAGYRSENVSSVGALGGMRLQDAPYSISVTPQALLKNIQATSLDDV EEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCCEEEEECHHHHHHCCCCCCHHHH IKHNPFTQMYSPTSAGYASAVNIRGFSSAGSLNIANNGLRFTNGADGSNYMEEMEQLEVI HHCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHH TGLTGFLYGPASPGGLVNYVLKRPTYQRYNSVTLGNAGGENYYLHGDFGGPIDSEGKFAY HCCHHEEECCCCCCHHHHHHHCCCCHHHHCCEEEECCCCCCEEEECCCCCCCCCCCCEEE RLNVLTQDGETAVDLNKRRREMISLALDWNVSDDLLVQFDASHKKTEIRGLTSYWYFGDQ EEEEEECCCCEEECHHHHHHEEEEEEEECCCCCCEEEEECCCCCCCHHCEEEEEEEECCC SLRPGAASLDNDKLYSQKWSFSDYESDKAGVRAKWRLNDTFTLRAAFAAQQYTSENTYTG CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEEHHHHHHCCCCCCCC PTVYSAGLYSQPLYAFAPIETEEKTGSLFLDAAFDTGFIGHKVTVGYQGNTSRQKQYEDH CCEEECCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHC IPYTPDQPGPQYTSPVGTIPLDQTPQVGKPSYSIGHGDQRLANSSESNNVLIGDVITFNE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECC QWSAILGVTNTQIKTYANEFVYAKAFGSAETETTYNESKTSPNISLVYKPLPWLTTYATY CCCEEEECCCCHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHH IEGLQSGGVAPGGTANAGQAFAPEISEQYEIGAKATLGETLLTLALFNIEKPNGYTTGAN HHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHEEEECCCCEECCCE IYVVDGRQENNGLEFSVTGKVIPELTVVGGFTLLDPKIKKTGVAADEGNVPTNVAKQLAK EEEECCCCCCCCEEEEECCCCCCEEEEECCEEEECCCHHHCCCCCCCCCCCHHHHHHHHH VYAEYDINPVPGLAMTGGAFYTGKQYTDQSNENDLPSFTTFDAGARYRLRLAENDLTLRV HHHHCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCEEEEE NVSNLTNKQYWLNSSYLGDPRTVAFSAQLEF EECCCCCCEEEECCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2830268; 13129954; 2311935 [H]