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The map label for this gene is yiaD [H]

Identifier: 66047081

GI number: 66047081

Start: 4592926

End: 4594086

Strand: Reverse

Name: yiaD [H]

Synonym: Psyr_3854

Alternate gene names: 66047081

Gene position: 4594086-4592926 (Counterclockwise)

Preceding gene: 66047082

Following gene: 66047080

Centisome position: 75.39

GC content: 65.46

Gene sequence:

>1161_bases
ATGTCGTCTAATAAAAGCCTCGTTCTCGCCCTGTGCATCGCCGTGACCGGCTGTGCCCAAACCCCACAATCCGACTCTGC
TGCAACCGGAGGCCATTGGTGGCAGTTCGGTTCCGGCAGCGAGTCCGCTGACGCAGGCACCGCTGCCAAGGCTCCGGCAC
CGAGCCCGGCGCCCGCTCCGGTTGCCAAGGCTGCTGCAACGCCGCCGCCTGCGACGGGTGCTGAAAACAGCGCGCCGTGG
TACTGGCCGTTCGGCTCCAGCGACAGTGCTCAGGCCAAACCTGATGCCGTTGCCGACAAACCGGCAGCCAAGCCAGCGGC
GCCTTCGATGGTCGCCAAGTCGGAAACCGACACCAAGTGGTGGTGGCCGTTTGGCAACGACTCCGCCAAGGACGAGCCTA
AAGCGCTGCCGATGCCTGATCCGAAAGTGACCCAGGCGTGGCTGGACGAGTACGAGCCGCGCCTGCGCGCTGCAATCAAG
GACAGCCCGTTCCAGCTGGAGCGCCGCGAAGACCTGCTGGCAATCACCGCGCCAGTCGACAGCTCGTTCAACCCCGACCG
TCCAGCCATGCTGTTGCCCAACACGCTGGGTCCGATCACCCGTCTGGCCAAGGTGGTCGAAGGCGATCAGAAAACTGCCG
TGTTGATTCTCGGTCATGCCGACACGTCGGGTCCTACCGACGCCAACCAGAAGATCAGCCAGGAACGCGCGCAGTCGGTT
GCCGCGATTTTCCGTCTCAGTGGCCTGGAGCGTAACCGCCTCAGCCAGCGTGGCATGGGTGCGGTGATGCCGCGCGCCGC
CAACGACAGCCTGCAGGGTCGTGCGCTCAACCGCCGGGTCGAGATTCTCATGACGCCGCAGGACACCATGCGCGCGCTGA
TGAGCCGCTATGCACTGCCGCCAGTGGCGCCGACCATGGTTGCTACCCAGGACGTCAAGCCGGTTGCTCCGGCACCTGCC
GCCGCACCGGCCAAGAAAGCCGCTGCGAAGAAAGACACCGCCAAGAAAGCTGCACCGGCCAAGGCCAGCACCGCCAAGAA
GGCCGCGCCAGCCAAGACCACGGCAGCGGCCAAGAAGCCGGCAGCGACCAAAGCGGCGGCCAAGGCTCCGGCCAAGAGCA
CAACGCCCGCCAAGAAGGATGACAGCCAGGCCAGTAACTAA

Upstream 100 bases:

>100_bases
AGGAACCGTACGACGGTTTCTTTTTCCAACTGCATCTTTATGCATGTTATACCGGCGTAGTTACGTCCTTCTGTCTGATC
AAAACCGTTGCGGGTTACCC

Downstream 100 bases:

>100_bases
GCCTGTCAGCACCCACGCGGATCGTCACTGACGCTTCGCGTGGAGTCGATCCGTGACCTCGCAGGAACCAGACCATGACC
CAGACCCTGGCCGATATGCG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MSSNKSLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGTAAKAPAPSPAPAPVAKAAATPPPATGAENSAPW
YWPFGSSDSAQAKPDAVADKPAAKPAAPSMVAKSETDTKWWWPFGNDSAKDEPKALPMPDPKVTQAWLDEYEPRLRAAIK
DSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADTSGPTDANQKISQERAQSV
AAIFRLSGLERNRLSQRGMGAVMPRAANDSLQGRALNRRVEILMTPQDTMRALMSRYALPPVAPTMVATQDVKPVAPAPA
AAPAKKAAAKKDTAKKAAPAKASTAKKAAPAKTTAAAKKPAATKAAAKAPAKSTTPAKKDDSQASN

Sequences:

>Translated_386_residues
MSSNKSLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGTAAKAPAPSPAPAPVAKAAATPPPATGAENSAPW
YWPFGSSDSAQAKPDAVADKPAAKPAAPSMVAKSETDTKWWWPFGNDSAKDEPKALPMPDPKVTQAWLDEYEPRLRAAIK
DSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADTSGPTDANQKISQERAQSV
AAIFRLSGLERNRLSQRGMGAVMPRAANDSLQGRALNRRVEILMTPQDTMRALMSRYALPPVAPTMVATQDVKPVAPAPA
AAPAKKAAAKKDTAKKAAPAKASTAKKAAPAKTTAAAKKPAATKAAAKAPAKSTTPAKKDDSQASN
>Mature_385_residues
SSNKSLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGTAAKAPAPSPAPAPVAKAAATPPPATGAENSAPWY
WPFGSSDSAQAKPDAVADKPAAKPAAPSMVAKSETDTKWWWPFGNDSAKDEPKALPMPDPKVTQAWLDEYEPRLRAAIKD
SPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADTSGPTDANQKISQERAQSVA
AIFRLSGLERNRLSQRGMGAVMPRAANDSLQGRALNRRVEILMTPQDTMRALMSRYALPPVAPTMVATQDVKPVAPAPAA
APAKKAAAKKDTAKKAAPAKASTAKKAAPAKTTAAAKKPAATKAAAKAPAKSTTPAKKDDSQASN

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=140, Percent_Identity=32.8571428571429, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 40129; Mature: 39997

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00758 ARGE_DAPE_CPG2_1 ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNKSLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGTAAKAPAPSPAPAP
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
VAKAAATPPPATGAENSAPWYWPFGSSDSAQAKPDAVADKPAAKPAAPSMVAKSETDTKW
HHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEE
WWPFGNDSAKDEPKALPMPDPKVTQAWLDEYEPRLRAAIKDSPFQLERREDLLAITAPVD
ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
SSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADTSGPTDANQKISQERAQSV
CCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
AAIFRLSGLERNRLSQRGMGAVMPRAANDSLQGRALNRRVEILMTPQDTMRALMSRYALP
HHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
PVAPTMVATQDVKPVAPAPAAAPAKKAAAKKDTAKKAAPAKASTAKKAAPAKTTAAAKKP
CCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHCCC
AATKAAAKAPAKSTTPAKKDDSQASN
CHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSNKSLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGTAAKAPAPSPAPAP
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
VAKAAATPPPATGAENSAPWYWPFGSSDSAQAKPDAVADKPAAKPAAPSMVAKSETDTKW
HHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEE
WWPFGNDSAKDEPKALPMPDPKVTQAWLDEYEPRLRAAIKDSPFQLERREDLLAITAPVD
ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
SSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADTSGPTDANQKISQERAQSV
CCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
AAIFRLSGLERNRLSQRGMGAVMPRAANDSLQGRALNRRVEILMTPQDTMRALMSRYALP
HHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
PVAPTMVATQDVKPVAPAPAAAPAKKAAAKKDTAKKAAPAKASTAKKAAPAKTTAAAKKP
CCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHCCC
AATKAAAKAPAKSTTPAKKDDSQASN
CHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]