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The map label for this gene is slyB [H]

Identifier: 66047079

GI number: 66047079

Start: 4591592

End: 4592056

Strand: Reverse

Name: slyB [H]

Synonym: Psyr_3852

Alternate gene names: 66047079

Gene position: 4592056-4591592 (Counterclockwise)

Preceding gene: 66047080

Following gene: 66047071

Centisome position: 75.36

GC content: 63.44

Gene sequence:

>465_bases
ATGCGCAAGTCTGCTCTTCTGGTTGCTTCGTTCACTGCCATGGCTCTGACGCTGGGCGGCTGTACCTCGAATCTGACCGG
TGATTCCTACTCCCGTGACGAGGCCAGGACCGTACAGACAGTTCGCATGGGGACGATCGAATCCTTGCGTCCGGTCAAGA
TCGAGGGCACCAAGACCCCGATCGGCGGCGCGGCGGGTGCAGTCGTTGGTGGTGTGGGCGGTAGCGCCATCGGCGGTGGT
CGCGGCAGTATCGTGGCAGCGGTGATCGGCGCAGTGGCCGGTGGTTTGCTGGGTTCGGCGACCGAGGAAGGCCTGACCCG
TACGCAAGGTGTCGAGATCACCGTGCGTGAGGACGACGGCAGCATGCGTGCCTACGTGCAGCAGGTTCAGGAAAACGAGA
TTTTCCGGGTCGGCGAGCGCGTGCGTATCATGAGCGTCAACGGCACCAGCCGCGTTACCCACTGA

Upstream 100 bases:

>100_bases
CTGTATGAGGCCTGAATCAATTTAATTTGCAGGCTCGGGGCCGTGACAGCACCTTTGTCGGGTAGTCTAATGGCCACTGA
TTCCTCTGGAGATTCCTTTT

Downstream 100 bases:

>100_bases
TCTGCAACACCGCACAGCAAAACCCCGAGCCGCAATGCTCGGGGTTTTTATTGGTGCGCCAGGCATGGCGCGTGAATATC
GTACCAATGCTCTGCGTTGG

Product: lipoprotein SlyB, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MRKSALLVASFTAMALTLGGCTSNLTGDSYSRDEARTVQTVRMGTIESLRPVKIEGTKTPIGGAAGAVVGGVGGSAIGGG
RGSIVAAVIGAVAGGLLGSATEEGLTRTQGVEITVREDDGSMRAYVQQVQENEIFRVGERVRIMSVNGTSRVTH

Sequences:

>Translated_154_residues
MRKSALLVASFTAMALTLGGCTSNLTGDSYSRDEARTVQTVRMGTIESLRPVKIEGTKTPIGGAAGAVVGGVGGSAIGGG
RGSIVAAVIGAVAGGLLGSATEEGLTRTQGVEITVREDDGSMRAYVQQVQENEIFRVGERVRIMSVNGTSRVTH
>Mature_154_residues
MRKSALLVASFTAMALTLGGCTSNLTGDSYSRDEARTVQTVRMGTIESLRPVKIEGTKTPIGGAAGAVVGGVGGSAIGGG
RGSIVAAVIGAVAGGLLGSATEEGLTRTQGVEITVREDDGSMRAYVQQVQENEIFRVGERVRIMSVNGTSRVTH

Specific function: Unknown

COG id: COG3133

COG function: function code M; Outer membrane lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pcp/slyB lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI48994887, Length=157, Percent_Identity=43.312101910828, Blast_Score=84, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 15754; Mature: 15754

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSALLVASFTAMALTLGGCTSNLTGDSYSRDEARTVQTVRMGTIESLRPVKIEGTKTP
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCC
IGGAAGAVVGGVGGSAIGGGRGSIVAAVIGAVAGGLLGSATEEGLTRTQGVEITVREDDG
CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEEECCC
SMRAYVQQVQENEIFRVGERVRIMSVNGTSRVTH
HHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCC
>Mature Secondary Structure
MRKSALLVASFTAMALTLGGCTSNLTGDSYSRDEARTVQTVRMGTIESLRPVKIEGTKTP
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCC
IGGAAGAVVGGVGGSAIGGGRGSIVAAVIGAVAGGLLGSATEEGLTRTQGVEITVREDDG
CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEEECCC
SMRAYVQQVQENEIFRVGERVRIMSVNGTSRVTH
HHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]