BacMap

Definition	Pseudomonas syringae pv. syringae B728a, complete genome.
Accession	NC_007005
Length	6,093,698

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The map label for this gene is fixR [H]

Identifier: 66047048

GI number: 66047048

Start: 4545901

End: 4546635

Strand: Direct

Name: fixR [H]

Synonym: Psyr_3821

Alternate gene names: 66047048

Gene position: 4545901-4546635 (Clockwise)

Preceding gene: 66047047

Following gene: 66047050

Centisome position: 74.6

GC content: 61.36

Gene sequence:

>735_bases
ATGGGCGACAAGAAAAAGCTTTTGCTGACTGGCGCAAGCCGGGGTATCGGTCATGCCACGGTCAAGCATTTCAATGCCGC
TGGCTGGGAGGTGTTTACCGCGTCGCGGCAGAACTGGGTCGATGACTGCCCGTGGGCTGAAGGTCTGCTCAACCACATTC
ACCTGGACCTGGAAAACATCGACAGCGTCAGCGAGAGCATGGCGGCGATCAAGGACAAGCTCGGCGGGCGGCTCGATGCG
CTGGTCAACAATGCCGGCGTTTCACCGAAGACCGAGGACGGCGGGCGCATGGGTGTGCTGGAGTCGGATTACAGCACCTG
GATCAAGGTGTTCAACGTCAATCTGTTCTCCACCGCGCTGCTGGGTCGGGGTTTGTTTGACGAGTTGAAGGCGGCCAAGG
GCAGCATCATCAATGTCACCTCGATCGCCGGCTCGAAGGTTCACCCGTTTGCGGGGGTCGCCTACGCCACGTCCAAGGCG
GCACTGTCGGCGCTGACCCGGGAAATGGCCTTCGATTTCGGTCCGCACGGGATACGGGTCAATGCCATTGCGCCGGGTGA
AATCGATACGTCGATTCTGTCACCCGGCACCGCCGAGATTGTCGAGCGGCTGGTGCCGATGCACCGGCTGGGCAAGCCCG
AGGAAGTCGCCTCGCTGATCTACTTCCTGTGTACGGCTGGCGCGTCCTACGTGAACGGTGCGGAGATTCACGTCAACGGC
GGCCAGCACGTCTGA

Upstream 100 bases:

>100_bases
CACAATGCGCACTGCCGCCTGACCGGTACTGCCTGAACCCCGTTGACACCCTTCCCAGCAAAAAACATGATGCATCCACC
CTAAAAACCGGAACGCACTC

Downstream 100 bases:

>100_bases
CTCAACGTGTGCCGGAAACGCTCTCCGGCACGCGGCGCACGCCCAGGCGACTGATCCACACCGACGCCACGATCACCCCG
CCGCCGATCAGCAGGCGGGT

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MGDKKKLLLTGASRGIGHATVKHFNAAGWEVFTASRQNWVDDCPWAEGLLNHIHLDLENIDSVSESMAAIKDKLGGRLDA
LVNNAGVSPKTEDGGRMGVLESDYSTWIKVFNVNLFSTALLGRGLFDELKAAKGSIINVTSIAGSKVHPFAGVAYATSKA
ALSALTREMAFDFGPHGIRVNAIAPGEIDTSILSPGTAEIVERLVPMHRLGKPEEVASLIYFLCTAGASYVNGAEIHVNG
GQHV

Sequences:

>Translated_244_residues
MGDKKKLLLTGASRGIGHATVKHFNAAGWEVFTASRQNWVDDCPWAEGLLNHIHLDLENIDSVSESMAAIKDKLGGRLDA
LVNNAGVSPKTEDGGRMGVLESDYSTWIKVFNVNLFSTALLGRGLFDELKAAKGSIINVTSIAGSKVHPFAGVAYATSKA
ALSALTREMAFDFGPHGIRVNAIAPGEIDTSILSPGTAEIVERLVPMHRLGKPEEVASLIYFLCTAGASYVNGAEIHVNG
GQHV
>Mature_243_residues
GDKKKLLLTGASRGIGHATVKHFNAAGWEVFTASRQNWVDDCPWAEGLLNHIHLDLENIDSVSESMAAIKDKLGGRLDAL
VNNAGVSPKTEDGGRMGVLESDYSTWIKVFNVNLFSTALLGRGLFDELKAAKGSIINVTSIAGSKVHPFAGVAYATSKAA
LSALTREMAFDFGPHGIRVNAIAPGEIDTSILSPGTAEIVERLVPMHRLGKPEEVASLIYFLCTAGASYVNGAEIHVNGG
QHV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=33.201581027668, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=34.156378600823, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=29.4820717131474, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI15277342, Length=166, Percent_Identity=36.144578313253, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI59889578, Length=178, Percent_Identity=31.4606741573034, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=27.5193798449612, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4503301, Length=203, Percent_Identity=33.0049261083744, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI4504503, Length=211, Percent_Identity=30.3317535545024, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI126723750, Length=150, Percent_Identity=31.3333333333333, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI66933014, Length=176, Percent_Identity=32.3863636363636, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI109715829, Length=237, Percent_Identity=29.957805907173, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI40254992, Length=237, Percent_Identity=28.6919831223629, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI33667109, Length=199, Percent_Identity=33.6683417085427, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=27.710843373494, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI119392083, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1788459, Length=194, Percent_Identity=33.5051546391753, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=32.5301204819277, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=30.2681992337165, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=32, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.9317269076305, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=31.7073170731707, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=28.0632411067194, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790717, Length=259, Percent_Identity=28.957528957529, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1789208, Length=198, Percent_Identity=32.8282828282828, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=27.734375, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789378, Length=256, Percent_Identity=28.125, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=32.421875, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=32.3076923076923, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=34.6153846153846, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=32.4, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=32.4324324324324, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=257, Percent_Identity=31.5175097276265, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=30.6818181818182, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=258, Percent_Identity=33.7209302325581, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=180, Percent_Identity=35, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=30.188679245283, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=31.6793893129771, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=30.9160305343511, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=30.0380228136882, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=29.5454545454545, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=29.3436293436293, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17561272, Length=209, Percent_Identity=32.0574162679426, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=271, Percent_Identity=29.8892988929889, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=31.5175097276265, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=29.0697674418605, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=31.203007518797, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=30.0380228136882, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.3893129770992, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=28.7449392712551, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=261, Percent_Identity=27.9693486590038, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=27.5862068965517, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=29.1828793774319, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=26.9230769230769, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=28.6852589641434, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=205, Percent_Identity=26.8292682926829, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=256, Percent_Identity=28.515625, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=192, Percent_Identity=30.2083333333333, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=32.2709163346614, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=35.3413654618474, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=34.136546184739, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24644337, Length=183, Percent_Identity=38.7978142076503, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=33.4645669291339, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=32.2834645669291, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=32.421875, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=31.1284046692607, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007234, Length=251, Percent_Identity=29.8804780876494, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25938; Mature: 25807

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDKKKLLLTGASRGIGHATVKHFNAAGWEVFTASRQNWVDDCPWAEGLLNHIHLDLENI
CCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHH
DSVSESMAAIKDKLGGRLDALVNNAGVSPKTEDGGRMGVLESDYSTWIKVFNVNLFSTAL
HHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHCCHHHHHHH
LGRGLFDELKAAKGSIINVTSIAGSKVHPFAGVAYATSKAALSALTREMAFDFGPHGIRV
HHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
NAIAPGEIDTSILSPGTAEIVERLVPMHRLGKPEEVASLIYFLCTAGASYVNGAEIHVNG
EEECCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEECC
GQHV
CCCC
>Mature Secondary Structure 
GDKKKLLLTGASRGIGHATVKHFNAAGWEVFTASRQNWVDDCPWAEGLLNHIHLDLENI
CCCCEEEEECCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHH
DSVSESMAAIKDKLGGRLDALVNNAGVSPKTEDGGRMGVLESDYSTWIKVFNVNLFSTAL
HHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHCCHHHHHHH
LGRGLFDELKAAKGSIINVTSIAGSKVHPFAGVAYATSKAALSALTREMAFDFGPHGIRV
HHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
NAIAPGEIDTSILSPGTAEIVERLVPMHRLGKPEEVASLIYFLCTAGASYVNGAEIHVNG
EEECCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEECC
GQHV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3313281; 11157954; 12597275 [H]