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The map label for this gene is dgdR [H]

Identifier: 66046853

GI number: 66046853

Start: 4307764

End: 4308654

Strand: Direct

Name: dgdR [H]

Synonym: Psyr_3624

Alternate gene names: 66046853

Gene position: 4307764-4308654 (Clockwise)

Preceding gene: 66046851

Following gene: 66046855

Centisome position: 70.69

GC content: 60.49

Gene sequence:

>891_bases
ATGTTCGTTATGCCTTCCATCTGGGAGTTTGATGTATTGGCCACCTACCCGAGCATTGATACCGAACTGTTGCGCACCTT
CGTGGCGATTGCCGATCACGGCGGTTTCACTCGCGCAGGTGAAGCGGTCAACCGCACACAGTCGGCGGTCAGCATGCAGA
TGAAGCGTCTGGAAGAAGACGTCGTGCAGCGCCCGCTGTTTCAGCGTGAAGGCCGGGTCCTGAACCTGACTGCGGAGGGC
CAGGTACTGCTCGGTTACGCGCGGCGAATTCTCAAGCTGCACAGCGAGGTGTTCAACACCTTGCGCGAGCCGCACATGAT
CGGCGTGGTGAAAATCGGCTCGCCGGACGATTACGTGATGCGCTTCCTGCCCGGCATTCTGGCGCAGTTCGCCCAGGCCT
ATCCGCTGGTTCAAGTGGAAGTGCATTGCGAGCCATCGGACCTTCTGCTGCAACGTCACGACCTGGATCTGACCATTGTC
ACGCGCAAGCCCGGCACCGAGATCGGCACGCTGCTGCGTCAGGAACGTCTGATGTGGATGGAGGCCGTCGGCTTTGCCCC
GCATGAGCAAACACCCATTCCGCTGGCGATGTTCAATACCCACTGTTTCTGTCGTGACTGGGCGTGCAATGCGCTGGACG
GCATGGGGCGCGATTACCGCATCGCCTACAGCAGCTCGAGCATGGCGGCGATCACTGCGGTGGTCAGCGCGGGCCTGGCA
GTCACCGCGCAGTTCCAGAGCCTGGCCACAGCGGATTTGCGTATCCTCGGCGAGGCGGAACAATTTCCACAGCTGCCAAC
CGCCAGCATCGTCCTCCTGCGCAAGCCTGAAAATCCCTCGCCCATCACCGAATGCATGGCCGATTACATCATCGCCGGCT
TCAAACCTTGA

Upstream 100 bases:

>100_bases
GCCCCCTTCTACCCCTGCGCATTGTTTTTGACCTTTCATCATCTTGCCCTCCATGTGGGATGACTGAAGTCTCGCTTCGG
GCGTAGGATCAATCCAACGA

Downstream 100 bases:

>100_bases
GCGCGAGAATGACCGCACAGAGCACCAGAAACACGCAGAACATCAGGCGCAGGGTGCGCTCCGGCAACGAATGCGCCAAC
TTCACGCCCCAGCTGATGCT

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MFVMPSIWEFDVLATYPSIDTELLRTFVAIADHGGFTRAGEAVNRTQSAVSMQMKRLEEDVVQRPLFQREGRVLNLTAEG
QVLLGYARRILKLHSEVFNTLREPHMIGVVKIGSPDDYVMRFLPGILAQFAQAYPLVQVEVHCEPSDLLLQRHDLDLTIV
TRKPGTEIGTLLRQERLMWMEAVGFAPHEQTPIPLAMFNTHCFCRDWACNALDGMGRDYRIAYSSSSMAAITAVVSAGLA
VTAQFQSLATADLRILGEAEQFPQLPTASIVLLRKPENPSPITECMADYIIAGFKP

Sequences:

>Translated_296_residues
MFVMPSIWEFDVLATYPSIDTELLRTFVAIADHGGFTRAGEAVNRTQSAVSMQMKRLEEDVVQRPLFQREGRVLNLTAEG
QVLLGYARRILKLHSEVFNTLREPHMIGVVKIGSPDDYVMRFLPGILAQFAQAYPLVQVEVHCEPSDLLLQRHDLDLTIV
TRKPGTEIGTLLRQERLMWMEAVGFAPHEQTPIPLAMFNTHCFCRDWACNALDGMGRDYRIAYSSSSMAAITAVVSAGLA
VTAQFQSLATADLRILGEAEQFPQLPTASIVLLRKPENPSPITECMADYIIAGFKP
>Mature_296_residues
MFVMPSIWEFDVLATYPSIDTELLRTFVAIADHGGFTRAGEAVNRTQSAVSMQMKRLEEDVVQRPLFQREGRVLNLTAEG
QVLLGYARRILKLHSEVFNTLREPHMIGVVKIGSPDDYVMRFLPGILAQFAQAYPLVQVEVHCEPSDLLLQRHDLDLTIV
TRKPGTEIGTLLRQERLMWMEAVGFAPHEQTPIPLAMFNTHCFCRDWACNALDGMGRDYRIAYSSSSMAAITAVVSAGLA
VTAQFQSLATADLRILGEAEQFPQLPTASIVLLRKPENPSPITECMADYIIAGFKP

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=272, Percent_Identity=34.5588235294118, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI157672245, Length=141, Percent_Identity=34.0425531914894, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=186, Percent_Identity=27.4193548387097, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787806, Length=132, Percent_Identity=29.5454545454545, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33025; Mature: 33025

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVMPSIWEFDVLATYPSIDTELLRTFVAIADHGGFTRAGEAVNRTQSAVSMQMKRLEED
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VVQRPLFQREGRVLNLTAEGQVLLGYARRILKLHSEVFNTLREPHMIGVVKIGSPDDYVM
HHHCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHH
RFLPGILAQFAQAYPLVQVEVHCEPSDLLLQRHDLDLTIVTRKPGTEIGTLLRQERLMWM
HHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
EAVGFAPHEQTPIPLAMFNTHCFCRDWACNALDGMGRDYRIAYSSSSMAAITAVVSAGLA
HHHCCCCCCCCCCCEEECCCCEEEECCCCHHHHCCCCCEEEEECCCCHHHHHHHHHCCHH
VTAQFQSLATADLRILGEAEQFPQLPTASIVLLRKPENPSPITECMADYIIAGFKP
EEHHHHHHHHHHHHEECCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFVMPSIWEFDVLATYPSIDTELLRTFVAIADHGGFTRAGEAVNRTQSAVSMQMKRLEED
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VVQRPLFQREGRVLNLTAEGQVLLGYARRILKLHSEVFNTLREPHMIGVVKIGSPDDYVM
HHHCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHH
RFLPGILAQFAQAYPLVQVEVHCEPSDLLLQRHDLDLTIVTRKPGTEIGTLLRQERLMWM
HHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
EAVGFAPHEQTPIPLAMFNTHCFCRDWACNALDGMGRDYRIAYSSSSMAAITAVVSAGLA
HHHCCCCCCCCCCCEEECCCCEEEECCCCHHHHCCCCCEEEEECCCCHHHHHHHHHCCHH
VTAQFQSLATADLRILGEAEQFPQLPTASIVLLRKPENPSPITECMADYIIAGFKP
EEHHHHHHHHHHHHEECCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]