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The map label for this gene is yciO [H]

Identifier: 66046814

GI number: 66046814

Start: 4268136

End: 4268804

Strand: Reverse

Name: yciO [H]

Synonym: Psyr_3585

Alternate gene names: 66046814

Gene position: 4268804-4268136 (Counterclockwise)

Preceding gene: 66046815

Following gene: 66046813

Centisome position: 70.05

GC content: 61.58

Gene sequence:

>669_bases
ATGAACAGCCTACTGCCTCCGTCTGAACAGGAAGTAATCGTGAGTCAATTTTTCCAGGTCCATCCGGAAAACCCGCAGCC
GCGCCTGATCAAACAGGCCGCTGAAATCATCAAGGCCGGCGGGCTGGTGGTGTACCCGACAGATTCGTCCTATGCACTGG
GTTGCCAGATCGGTGACAAGAGCGCCATCGAGCGTATCCGCCGCCTGCGCCAGCTGGACGACAAGCACAACTTCACCCTG
ATGTGCTGTGATCTGTCGCAACTGGGGCTGTTTGCCAAGGTCGACACCGGCGCGTTCCGCGCACTGAAGGCGCACACGCC
AGGGCCATACACCTTCATTCTCAACGCCACCCGCGAGGTGCCGCGTCTGGTGCTGCACCCCAAGCGCCGCACCATCGGCC
TGCGTGTGCCAAGCCATCCCATCGCCCAGGCCCTGCTGGAGCAATTGGGCGAGCCGCTGATGAGCGTCAGCCTGATCATG
CCGGGCGACAGCGTGCCCCTCAGCGATCCCTATGAGATGCGCCAGGTTCTCGAGCATCAGGTCGACCTGATCATCGATGG
CGGGATCGGCGGTATTTCGGCGTCCACGGTCATTAACCTGGCTGAGGGTGAACCCCAGATCGTTCGGGTTGGTTGCGGTG
ATCCGACGCCTTTCGGTGAACGCGCCTGA

Upstream 100 bases:

>100_bases
TCCGCCGGCAGCGACTTCCACGGTCCTGGCACCTGGGGCGAAATCGGCACTTATCGCCCCGTGCCTGAAGATCTACCGCC
TTTGTGGTGCAGATTCAAAC

Downstream 100 bases:

>100_bases
TGACAGCCGTCGAGTCGGTGGACAGCCAGGCAGACGCCCAGCAGGAACTGCCGTTCGCGCTGGTCTATGGGCGTGCTGTC
ACGCAGATGCCGCTGGACCT

Product: Sua5/YciO/YrdC/YwlC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNSLLPPSEQEVIVSQFFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTL
MCCDLSQLGLFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIM
PGDSVPLSDPYEMRQVLEHQVDLIIDGGIGGISASTVINLAEGEPQIVRVGCGDPTPFGERA

Sequences:

>Translated_222_residues
MNSLLPPSEQEVIVSQFFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTL
MCCDLSQLGLFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIM
PGDSVPLSDPYEMRQVLEHQVDLIIDGGIGGISASTVINLAEGEPQIVRVGCGDPTPFGERA
>Mature_222_residues
MNSLLPPSEQEVIVSQFFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTL
MCCDLSQLGLFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIM
PGDSVPLSDPYEMRQVLEHQVDLIIDGGIGGISASTVINLAEGEPQIVRVGCGDPTPFGERA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=60.9756097560976, Blast_Score=259, Evalue=7e-71,
Organism=Escherichia coli, GI2367210, Length=145, Percent_Identity=26.8965517241379, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 24263; Mature: 24263

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLLPPSEQEVIVSQFFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDK
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCH
SAIERIRRLRQLDDKHNFTLMCCDLSQLGLFAKVDTGAFRALKAHTPGPYTFILNATREV
HHHHHHHHHHHCCCCCCEEEEEECHHHCCEEEEECCCHHHEEECCCCCCEEEEEECCCCC
PRLVLHPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQVLEHQ
CHHHCCCCCCEEEEECCCCHHHHHHHHHHCCHHHEEEEEECCCCCCCCCHHHHHHHHHHH
VDLIIDGGIGGISASTVINLAEGEPQIVRVGCGDPTPFGERA
EEEEEECCCCCCCHHHEEEECCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNSLLPPSEQEVIVSQFFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDK
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCH
SAIERIRRLRQLDDKHNFTLMCCDLSQLGLFAKVDTGAFRALKAHTPGPYTFILNATREV
HHHHHHHHHHHCCCCCCEEEEEECHHHCCEEEEECCCHHHEEECCCCCCEEEEEECCCCC
PRLVLHPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQVLEHQ
CHHHCCCCCCEEEEECCCCHHHHHHHHHHCCHHHEEEEEECCCCCCCCCHHHHHHHHHHH
VDLIIDGGIGGISASTVINLAEGEPQIVRVGCGDPTPFGERA
EEEEEECCCCCCCHHHEEEECCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]