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The map label for this gene is scpB [H]

Identifier: 66046812

GI number: 66046812

Start: 4266535

End: 4267302

Strand: Reverse

Name: scpB [H]

Synonym: Psyr_3583

Alternate gene names: 66046812

Gene position: 4267302-4266535 (Counterclockwise)

Preceding gene: 66046813

Following gene: 66046811

Centisome position: 70.03

GC content: 63.28

Gene sequence:

>768_bases
ATGAATCTCAACGAACCTCGCGAACTGGCCCCGTTGCTTGAAGCATTTCTGCTGGCCTCCGGAAAACCGCAGACGCTGGA
GCGGCTGTATGAGCTGTTCGAGGAAGGCGAGCGCCCTGAACCTCCGGTGTTCAAAAAGGCGCTCGAGGTGTTGCGCAAGT
CCTGTGAGGGGCGCGCCTTCGAACTCAAGGAAGTGGCGTCGGGTTATCGTCTGCAGATTCGTGACCGCTTTTCGCCGTGG
GTCGGGCGGTTGTGGGAAGAGCGGCCGCAGCGTTACTCCCGGGCCATGCTGGAAACCCTCGCGCTGATCGCTTACCGCCA
GCCGATCACGCGGGGCGAGATCGAAGATGTGCGCGGTGTTGCGGTCAACAGCCACATCGTCAAGACCCTGCTCGAGCGCG
AGTGGATTCGCGTGGTGGGCTACCGTGATGTGCCCGGCAAACCGGCCATGTTCGCGACCACCAAGGGCTTTCTCGACCAC
TTCAACCTCAAAAGCCTCGACGAACTGCCGCCGCTGGCCGACCTGCGCGAGATGGAAACCGAGCCAGTGCTGGATTTCGA
AGAGGCGCCGGTGCCTGCGCACCTGCAAGCCCTGGCCGACGCCAGCCTCGACCCGGACGCAGAGCCCGAAGCCCCGCGTG
ACGAAACCAGCTTCCGCAGCCTGCTGGTGGAACTGGACTCGATGGAGCAGGGCCTCAAGACCGACTTCGACGACCTGCTG
CGCGCGGAGCCAGAGCCTGAAGACGACAAAGGCGACGATGAGGTCTGA

Upstream 100 bases:

>100_bases
GCTTGAGCTGGTCAAGGAATCCCTTGTCGAGCTGGTCCAAAACGAGCCCTTTGCGGCGATCCATGTCCGGGCGCGAGCCG
AGTAGAGCTAAAACACACCC

Downstream 100 bases:

>100_bases
TTGACTAGCGCTCCCACGCTGAAGCGTTCAGCGTGATACACAAGTCTCGTGGGAGCGAGCTTGCTCGCGAAGGCGATGGT
GCAGGCTCGCTATTTTCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MNLNEPRELAPLLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRLQIRDRFSPW
VGRLWEERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTLLEREWIRVVGYRDVPGKPAMFATTKGFLDH
FNLKSLDELPPLADLREMETEPVLDFEEAPVPAHLQALADASLDPDAEPEAPRDETSFRSLLVELDSMEQGLKTDFDDLL
RAEPEPEDDKGDDEV

Sequences:

>Translated_255_residues
MNLNEPRELAPLLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRLQIRDRFSPW
VGRLWEERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTLLEREWIRVVGYRDVPGKPAMFATTKGFLDH
FNLKSLDELPPLADLREMETEPVLDFEEAPVPAHLQALADASLDPDAEPEAPRDETSFRSLLVELDSMEQGLKTDFDDLL
RAEPEPEDDKGDDEV
>Mature_255_residues
MNLNEPRELAPLLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRLQIRDRFSPW
VGRLWEERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTLLEREWIRVVGYRDVPGKPAMFATTKGFLDH
FNLKSLDELPPLADLREMETEPVLDFEEAPVPAHLQALADASLDPDAEPEAPRDETSFRSLLVELDSMEQGLKTDFDDLL
RAEPEPEDDKGDDEV

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 29170; Mature: 29170

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNEPRELAPLLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAF
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
ELKEVASGYRLQIRDRFSPWVGRLWEERPQRYSRAMLETLALIAYRQPITRGEIEDVRGV
HHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AVNSHIVKTLLEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPLADLREMET
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHCC
EPVLDFEEAPVPAHLQALADASLDPDAEPEAPRDETSFRSLLVELDSMEQGLKTDFDDLL
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
RAEPEPEDDKGDDEV
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MNLNEPRELAPLLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAF
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
ELKEVASGYRLQIRDRFSPWVGRLWEERPQRYSRAMLETLALIAYRQPITRGEIEDVRGV
HHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AVNSHIVKTLLEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPLADLREMET
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHCC
EPVLDFEEAPVPAHLQALADASLDPDAEPEAPRDETSFRSLLVELDSMEQGLKTDFDDLL
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
RAEPEPEDDKGDDEV
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]