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The map label for this gene is rbcR [H]

Identifier: 66046755

GI number: 66046755

Start: 4202856

End: 4203761

Strand: Direct

Name: rbcR [H]

Synonym: Psyr_3526

Alternate gene names: 66046755

Gene position: 4202856-4203761 (Clockwise)

Preceding gene: 66046751

Following gene: 66046756

Centisome position: 68.97

GC content: 62.03

Gene sequence:

>906_bases
ATGAGCCTCGTTCAAGATCGACGCATCCTGTACTTTTTCGAAGCCGTACGATTGGGTAGCGTCCGGGCTGCCGCCGACTT
CCTCAACGTTGCGCCTTCGGCGGTCAGCCGCCAGATCGCGCAACTGGAACAGGAGCTGGGTTCCCCCCTGCTGGAGCGCC
ATCGACGCGGCGTCAAACCGACCGAGGCGGGCGACAAGGTGCTGGCCTATTACCGCCAGCGACTGACGCAGCAGGAGGTC
CTGCTGGATTCGATTCAGGCCCTCAAAGGCTTGCACAGCGGCTCGGTGACGCTGGTCTCCGGGGAGGGGTTTCTGGAAAG
TCTCGCGCAGCCGCTGGCCCGGTTTTCCGAGCTGTACCCCAGGATCGAACTGATCGTGAACGTCTGCGGCAGCAACGAAG
TGATTCGCCAGGTGGTCGAGGATGAAGCGCACATCGGCCTGGTCTTCAATCCGGCTGCCGACCCGAAAATCCGCTCGCAT
GCGCATCAGCGTCAACCGGTCTGTGTGATCACCGGGCCTGATCATCCGCTGACCGACGAACCAGGCCCGATACAGCTGCG
GGCACTTGAAGACTACCGTGTCGCCCTGCCTGCGGTGTCTTACGGTATCCGCCAGATTCTGCTGCAAGCCGAGCATCAGC
TGGGCATCACCGTGCAGCCGACGCTGACCTGCAGCACCTTCGCGATGCTCAAGCATTTCGCCATGCAAGGGGGCGTCACG
CTGCTGCCGACCTTTGTCGTGGAGGAAGAGATAAAAGCCGGCACATTGCGTGCCCTGCCCTTGCAGCATGAGGTGTTCAG
CAGCCCGCAAACCCACCTGATCAGCCGCCTGGGCCGTCAGCTCAGCGTTGGTGCCAACCGCCTGATGGGCATGCTGTTGC
AGGATATGACAGCGTTCCGCAACTGA

Upstream 100 bases:

>100_bases
CGGCAATGTGCTGGTGATTCGAGTATGGACAGCGCTCTCCCCTCTCAGCAATAATCCAAAAATCGAATTTATGTTGCCTT
TAGCGCAACACTGGAAGCCC

Downstream 100 bases:

>100_bases
CCTACCGTTAGTCCGCGCGTCAAGCAATCGCGCTGAACCAACAAAAAGCTCATGGTTCATCTTCAGTAACGGAGCGGAAT
TCCTGCTGCCACTGAGGATT

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSLVQDRRILYFFEAVRLGSVRAAADFLNVAPSAVSRQIAQLEQELGSPLLERHRRGVKPTEAGDKVLAYYRQRLTQQEV
LLDSIQALKGLHSGSVTLVSGEGFLESLAQPLARFSELYPRIELIVNVCGSNEVIRQVVEDEAHIGLVFNPAADPKIRSH
AHQRQPVCVITGPDHPLTDEPGPIQLRALEDYRVALPAVSYGIRQILLQAEHQLGITVQPTLTCSTFAMLKHFAMQGGVT
LLPTFVVEEEIKAGTLRALPLQHEVFSSPQTHLISRLGRQLSVGANRLMGMLLQDMTAFRN

Sequences:

>Translated_301_residues
MSLVQDRRILYFFEAVRLGSVRAAADFLNVAPSAVSRQIAQLEQELGSPLLERHRRGVKPTEAGDKVLAYYRQRLTQQEV
LLDSIQALKGLHSGSVTLVSGEGFLESLAQPLARFSELYPRIELIVNVCGSNEVIRQVVEDEAHIGLVFNPAADPKIRSH
AHQRQPVCVITGPDHPLTDEPGPIQLRALEDYRVALPAVSYGIRQILLQAEHQLGITVQPTLTCSTFAMLKHFAMQGGVT
LLPTFVVEEEIKAGTLRALPLQHEVFSSPQTHLISRLGRQLSVGANRLMGMLLQDMTAFRN
>Mature_300_residues
SLVQDRRILYFFEAVRLGSVRAAADFLNVAPSAVSRQIAQLEQELGSPLLERHRRGVKPTEAGDKVLAYYRQRLTQQEVL
LDSIQALKGLHSGSVTLVSGEGFLESLAQPLARFSELYPRIELIVNVCGSNEVIRQVVEDEAHIGLVFNPAADPKIRSHA
HQRQPVCVITGPDHPLTDEPGPIQLRALEDYRVALPAVSYGIRQILLQAEHQLGITVQPTLTCSTFAMLKHFAMQGGVTL
LPTFVVEEEIKAGTLRALPLQHEVFSSPQTHLISRLGRQLSVGANRLMGMLLQDMTAFRN

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=251, Percent_Identity=25.4980079681275, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI157672245, Length=245, Percent_Identity=25.7142857142857, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082132, Length=260, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787879, Length=182, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=73, Percent_Identity=45.2054794520548, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33307; Mature: 33176

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVQDRRILYFFEAVRLGSVRAAADFLNVAPSAVSRQIAQLEQELGSPLLERHRRGVKP
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
TEAGDKVLAYYRQRLTQQEVLLDSIQALKGLHSGSVTLVSGEGFLESLAQPLARFSELYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
RIELIVNVCGSNEVIRQVVEDEAHIGLVFNPAADPKIRSHAHQRQPVCVITGPDHPLTDE
HHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCC
PGPIQLRALEDYRVALPAVSYGIRQILLQAEHQLGITVQPTLTCSTFAMLKHFAMQGGVT
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCH
LLPTFVVEEEIKAGTLRALPLQHEVFSSPQTHLISRLGRQLSVGANRLMGMLLQDMTAFR
HHHHHHHHHHHCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
N
C
>Mature Secondary Structure 
SLVQDRRILYFFEAVRLGSVRAAADFLNVAPSAVSRQIAQLEQELGSPLLERHRRGVKP
CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
TEAGDKVLAYYRQRLTQQEVLLDSIQALKGLHSGSVTLVSGEGFLESLAQPLARFSELYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
RIELIVNVCGSNEVIRQVVEDEAHIGLVFNPAADPKIRSHAHQRQPVCVITGPDHPLTDE
HHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCC
PGPIQLRALEDYRVALPAVSYGIRQILLQAEHQLGITVQPTLTCSTFAMLKHFAMQGGVT
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCH
LLPTFVVEEEIKAGTLRALPLQHEVFSSPQTHLISRLGRQLSVGANRLMGMLLQDMTAFR
HHHHHHHHHHHCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]