| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is 66046697
Identifier: 66046697
GI number: 66046697
Start: 4132101
End: 4135007
Strand: Reverse
Name: 66046697
Synonym: Psyr_3468
Alternate gene names: NA
Gene position: 4135007-4132101 (Counterclockwise)
Preceding gene: 66046698
Following gene: 66046696
Centisome position: 67.86
GC content: 61.47
Gene sequence:
>2907_bases ATGCAAAGCCATTCGGTAAATGAACACACCGCTTTGAATCAGCGCCTGACCCTGCTGTTGATGGCCAAGGACCAGCCAGA CTTCCTGCGCCGCGCCTTGAAGTATTACAGCCAGTTTCCGTGCACCCTCATAGTGGTCGATGCGTCAGCCCAGCCTGATG CGGAGATTGCCGGCACAGCCGGCCTGCATTACCTGCGCGGTGACGCGCTGGCCAGTGCCAGCCTTGGCGTCAGGGTCGCC GAGGGGCTCAAGCAGGTGACCACGCCCTTCGTGGTTCAGGCTCCGGTCGACAGTTTTCTGCTGCCTGATGCACTGAGCGC AGCGCTGAGCTTTCTTGAGGCCAACCCCACCTACGGCGCCTGTCAGGGCTACAGCCTGAGCTATCAGGCGCAGGTCGGTC AGGTGGACTATTTCCGTCGCGATCGCAAAACCTGCGAAGACTATGCCGCGGATGACGCGGGCGAGCGGGTTCTGAGTTTC ATGAGTGAAAGCCTGTCGCTGCTCAGCGCAGTGACGCGCACGGAGCTGGCGCAGCAGTGGTTCACTTCGGTTACCGATGA CACCGAGCCGCACTGGCAGGAAATCGGCCATATGAACTATCTGGTTGCGGCGGCCCGCCTGCGCATCCTGCCAATCGCTT ATGCACTGCACTTCACCTCGGGCAAGCAGGCCGAGCTACGCCATGGCGCGGCCATTGCCGCCGCCGTCAGGCACACTGAT CCCAAGGCCAGGGCCGCCCGCGATGCGTTCGCCAAAAAACTGGTCGCGCTGCTCGGTGAGGGCTCGGGCTTCGACAGCGC GCAGGGCGAACAGAAGATTCAGGCCGGTCTTGCCGCCATGGGCGAGTGCCTCAAGACCCAGGGCTTCCAGGGCGGTGAGA AAATCATCAGTGCGGTGTGGAATGTCGGCCTTGAGCAATCGGACGCGCTCTTCGAGCCTCGCCAGTTCGTCGAAATGCCG TTTTACAACCAGGCACTGTTCGATGAGCTGGCCAGAATCGAATTCCTCATCCATCTGATGCCGGCGGGCCGTCTGCAGTT GGAAGGGCTGGAAGCGGCGCTGCTCAAGCAGGCCGAGTTGTTGCGCGAGCAGAGCAACCCGGACGCCGAAGCGCGCATCA GCCGCCTGTGGTACGCCTACGAAACCTACGCCTTCAATCTGGGCGTCGTGAAGAGCCTGATCGCGGAATTGATCAGCGGC AAAGGCAAGGACAGCGAAAAGCAGATCGAACAGGTTTCGGCCTGGAGCCAGCGTCTGCAGGCGGCATCCGCTTTCGACAA CGGTCGGCTGCTCGATGGCATGGCTTCCGGTCAACTGCTCAACTGGCTCGATTCGCGCGATCCGGCGCCTGAGGCCCTCA AGCAGATCAGCGACAAACTCGCCAGCAAACCGGCCGGGTCGCAGATCGGTATCCTGGTGCTGGATCTGGAAGCGGATGTA TTCAAGCTGCAGGCCACGTTCGACAGCCTGATCAACAGTCATTACAAGGCGTTCAGGGTGGCGGTGTTCACCACCGGGGA ATTGCCGGCCGTGACTACGCTGCACAGTACCCTGCACTTTGTGAAAGTCACCGAAAGCAACTACGTCGACAAGATTAACC AGTTCGTCAAACAGTCGCCCAGCGACTGGCTGATGCTCGCGCACGCAGGCGAGGAGTTCACCCGCAGCGGTCTGCTGCTG GCCAGCGCCGAGCTGATCGATGCCGCGCAGTGCCGGGCTGTGGCCGTGGACGAGGTTCAGCGTCAGGCCAACGGCACGCT GGCCCCGTTGTTCCGTCCCGGTTTCAACCTTGATCTGCTGCAAAGTCTGCCGGCATTGATGGCTCGTCACTGGCTGGTGC GTCGCGAGTTGCTGGTCGAGGCGGGTGGATACTCGCGCGAGTTTCCCGAGGCGCTGGAATTCGATCTGTTGCTGCGTCTG ATCGAGCAGGGCGGCATGAGCGGTCTGGCCCATCTGAGCGAGCCGTTGCTGATCTGTGAGGCGCCCGAATTGAAAGACAA TCCGGACGAACAGAAAGCGCTCAAGCGCCACCTTGGCAAGCGCGGTTATCAGGCTGAAGTCAGCTCGGCGCAGCCTGGCA CCTACAAGATCGATTATCGCCACGCCCACCGGCCGGTGGTTTCGATCCTGCTGCACAGCCAGGACAACCTGCCCCAATTG CAGCGTTGCCTGCAAAGCATTCTGCAACGCACCCGCTATCAGCGTTATGAAGTGCTGATCGGTGACAACGCCAGCACCTC TGCCGAACTGTCGACCTGGCTTGACCGGCAGGAGCAGGTGTCGGGTCGGGTGCGGGTGTTCCGCGCCGAGCAGCGCATGA GCCCGGCAGCCTTGCGCAATCTGATCAGTCAGGAAGCCGGTGGCGAATACCTGATCCTGCTGGATGCCGAAAGTCAGATC GTCAATGTCGGCTGGATCGAATCACTGCTCAACCAGGCGCAGCGTCCGGAAGTGGGCGTGGTAGGCGCCAAGCTGGTGGA CGGCGAAGGTGCAGTGACTCAGGCCGGTCTGGTGCTGGGCCTGAATGGCGGTGTGGGTTCGGGGTTCGTCGGTGAGCCCA AGACCGCCACTGGCTATATGCAGCGCCTGGTGGTCGAGCAGAACTACTCTGCCGTGTCATCGGCCTGCCTGATGATTGCC AAGGAGCTGTACAACGCAGTGGGCGGTCTTGATGAGGAGGCATTCGCCGAAGCACTGGGCGATGTCGATCTGTGCCTCAA GGCGGCGCAAGCCGGCTATCTGACCGTATGGACGCCGCATGTGCAGGTAGTGCATTCCGGTGTGCTGCATGCCCCGCAGC AGGCGCGCGAAGCATTGATGGACAAGTGGTCATCGCAGTTCGCGCAGGATGAAGCCTACAACGTCAATCTGGATCTCCAC GGCAAAGGCTTCACTCTGGCCGTTTGA
Upstream 100 bases:
>100_bases ACACGCGCCAGCGGGTTGCCCGCTGGCACGGTCACGCTACGCTCTTGCTTCAACGCCCGCTGCGGTTGAAGGCGCAATCG ATTCGTTATAAGGAAAGATC
Downstream 100 bases:
>100_bases GTCGTTCAGCCCCCGTAAAACCGGCTGCTGCGCGGCCGGTTTGTCACTTTGAAGGCTTCTTCGCAGGAAGCTGCCGGCAA GCATCAAGTGCATGTTCCCT
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 968; Mature: 968
Protein sequence:
>968_residues MQSHSVNEHTALNQRLTLLLMAKDQPDFLRRALKYYSQFPCTLIVVDASAQPDAEIAGTAGLHYLRGDALASASLGVRVA EGLKQVTTPFVVQAPVDSFLLPDALSAALSFLEANPTYGACQGYSLSYQAQVGQVDYFRRDRKTCEDYAADDAGERVLSF MSESLSLLSAVTRTELAQQWFTSVTDDTEPHWQEIGHMNYLVAAARLRILPIAYALHFTSGKQAELRHGAAIAAAVRHTD PKARAARDAFAKKLVALLGEGSGFDSAQGEQKIQAGLAAMGECLKTQGFQGGEKIISAVWNVGLEQSDALFEPRQFVEMP FYNQALFDELARIEFLIHLMPAGRLQLEGLEAALLKQAELLREQSNPDAEARISRLWYAYETYAFNLGVVKSLIAELISG KGKDSEKQIEQVSAWSQRLQAASAFDNGRLLDGMASGQLLNWLDSRDPAPEALKQISDKLASKPAGSQIGILVLDLEADV FKLQATFDSLINSHYKAFRVAVFTTGELPAVTTLHSTLHFVKVTESNYVDKINQFVKQSPSDWLMLAHAGEEFTRSGLLL ASAELIDAAQCRAVAVDEVQRQANGTLAPLFRPGFNLDLLQSLPALMARHWLVRRELLVEAGGYSREFPEALEFDLLLRL IEQGGMSGLAHLSEPLLICEAPELKDNPDEQKALKRHLGKRGYQAEVSSAQPGTYKIDYRHAHRPVVSILLHSQDNLPQL QRCLQSILQRTRYQRYEVLIGDNASTSAELSTWLDRQEQVSGRVRVFRAEQRMSPAALRNLISQEAGGEYLILLDAESQI VNVGWIESLLNQAQRPEVGVVGAKLVDGEGAVTQAGLVLGLNGGVGSGFVGEPKTATGYMQRLVVEQNYSAVSSACLMIA KELYNAVGGLDEEAFAEALGDVDLCLKAAQAGYLTVWTPHVQVVHSGVLHAPQQAREALMDKWSSQFAQDEAYNVNLDLH GKGFTLAV
Sequences:
>Translated_968_residues MQSHSVNEHTALNQRLTLLLMAKDQPDFLRRALKYYSQFPCTLIVVDASAQPDAEIAGTAGLHYLRGDALASASLGVRVA EGLKQVTTPFVVQAPVDSFLLPDALSAALSFLEANPTYGACQGYSLSYQAQVGQVDYFRRDRKTCEDYAADDAGERVLSF MSESLSLLSAVTRTELAQQWFTSVTDDTEPHWQEIGHMNYLVAAARLRILPIAYALHFTSGKQAELRHGAAIAAAVRHTD PKARAARDAFAKKLVALLGEGSGFDSAQGEQKIQAGLAAMGECLKTQGFQGGEKIISAVWNVGLEQSDALFEPRQFVEMP FYNQALFDELARIEFLIHLMPAGRLQLEGLEAALLKQAELLREQSNPDAEARISRLWYAYETYAFNLGVVKSLIAELISG KGKDSEKQIEQVSAWSQRLQAASAFDNGRLLDGMASGQLLNWLDSRDPAPEALKQISDKLASKPAGSQIGILVLDLEADV FKLQATFDSLINSHYKAFRVAVFTTGELPAVTTLHSTLHFVKVTESNYVDKINQFVKQSPSDWLMLAHAGEEFTRSGLLL ASAELIDAAQCRAVAVDEVQRQANGTLAPLFRPGFNLDLLQSLPALMARHWLVRRELLVEAGGYSREFPEALEFDLLLRL IEQGGMSGLAHLSEPLLICEAPELKDNPDEQKALKRHLGKRGYQAEVSSAQPGTYKIDYRHAHRPVVSILLHSQDNLPQL QRCLQSILQRTRYQRYEVLIGDNASTSAELSTWLDRQEQVSGRVRVFRAEQRMSPAALRNLISQEAGGEYLILLDAESQI VNVGWIESLLNQAQRPEVGVVGAKLVDGEGAVTQAGLVLGLNGGVGSGFVGEPKTATGYMQRLVVEQNYSAVSSACLMIA KELYNAVGGLDEEAFAEALGDVDLCLKAAQAGYLTVWTPHVQVVHSGVLHAPQQAREALMDKWSSQFAQDEAYNVNLDLH GKGFTLAV >Mature_968_residues MQSHSVNEHTALNQRLTLLLMAKDQPDFLRRALKYYSQFPCTLIVVDASAQPDAEIAGTAGLHYLRGDALASASLGVRVA EGLKQVTTPFVVQAPVDSFLLPDALSAALSFLEANPTYGACQGYSLSYQAQVGQVDYFRRDRKTCEDYAADDAGERVLSF MSESLSLLSAVTRTELAQQWFTSVTDDTEPHWQEIGHMNYLVAAARLRILPIAYALHFTSGKQAELRHGAAIAAAVRHTD PKARAARDAFAKKLVALLGEGSGFDSAQGEQKIQAGLAAMGECLKTQGFQGGEKIISAVWNVGLEQSDALFEPRQFVEMP FYNQALFDELARIEFLIHLMPAGRLQLEGLEAALLKQAELLREQSNPDAEARISRLWYAYETYAFNLGVVKSLIAELISG KGKDSEKQIEQVSAWSQRLQAASAFDNGRLLDGMASGQLLNWLDSRDPAPEALKQISDKLASKPAGSQIGILVLDLEADV FKLQATFDSLINSHYKAFRVAVFTTGELPAVTTLHSTLHFVKVTESNYVDKINQFVKQSPSDWLMLAHAGEEFTRSGLLL ASAELIDAAQCRAVAVDEVQRQANGTLAPLFRPGFNLDLLQSLPALMARHWLVRRELLVEAGGYSREFPEALEFDLLLRL IEQGGMSGLAHLSEPLLICEAPELKDNPDEQKALKRHLGKRGYQAEVSSAQPGTYKIDYRHAHRPVVSILLHSQDNLPQL QRCLQSILQRTRYQRYEVLIGDNASTSAELSTWLDRQEQVSGRVRVFRAEQRMSPAALRNLISQEAGGEYLILLDAESQI VNVGWIESLLNQAQRPEVGVVGAKLVDGEGAVTQAGLVLGLNGGVGSGFVGEPKTATGYMQRLVVEQNYSAVSSACLMIA KELYNAVGGLDEEAFAEALGDVDLCLKAAQAGYLTVWTPHVQVVHSGVLHAPQQAREALMDKWSSQFAQDEAYNVNLDLH GKGFTLAV
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 106107; Mature: 106107
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSHSVNEHTALNQRLTLLLMAKDQPDFLRRALKYYSQFPCTLIVVDASAQPDAEIAGTA CCCCCCCHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC GLHYLRGDALASASLGVRVAEGLKQVTTPFVVQAPVDSFLLPDALSAALSFLEANPTYGA CHHHHCCCHHHHHHCCHHHHHHHHHHCCCEEEECCCHHHHCHHHHHHHHHHHHCCCCCCC CQGYSLSYQAQVGQVDYFRRDRKTCEDYAADDAGERVLSFMSESLSLLSAVTRTELAQQW CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTSVTDDTEPHWQEIGHMNYLVAAARLRILPIAYALHFTSGKQAELRHGAAIAAAVRHTD HHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCC PKARAARDAFAKKLVALLGEGSGFDSAQGEQKIQAGLAAMGECLKTQGFQGGEKIISAVW HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH NVGLEQSDALFEPRQFVEMPFYNQALFDELARIEFLIHLMPAGRLQLEGLEAALLKQAEL HCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH LREQSNPDAEARISRLWYAYETYAFNLGVVKSLIAELISGKGKDSEKQIEQVSAWSQRLQ HHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH AASAFDNGRLLDGMASGQLLNWLDSRDPAPEALKQISDKLASKPAGSQIGILVLDLEADV HHHHCCCCCEECCHHCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH FKLQATFDSLINSHYKAFRVAVFTTGELPAVTTLHSTLHFVKVTESNYVDKINQFVKQSP HHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHCCC SDWLMLAHAGEEFTRSGLLLASAELIDAAQCRAVAVDEVQRQANGTLAPLFRPGFNLDLL CCEEEEEECCHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH QSLPALMARHWLVRRELLVEAGGYSREFPEALEFDLLLRLIEQGGMSGLAHLSEPLLICE HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEC APELKDNPDEQKALKRHLGKRGYQAEVSSAQPGTYKIDYRHAHRPVVSILLHSQDNLPQL CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHH QRCLQSILQRTRYQRYEVLIGDNASTSAELSTWLDRQEQVSGRVRVFRAEQRMSPAALRN HHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHCCCHHHHHH LISQEAGGEYLILLDAESQIVNVGWIESLLNQAQRPEVGVVGAKLVDGEGAVTQAGLVLG HHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCEEEE LNGGVGSGFVGEPKTATGYMQRLVVEQNYSAVSSACLMIAKELYNAVGGLDEEAFAEALG ECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC DVDLCLKAAQAGYLTVWTPHVQVVHSGVLHAPQQAREALMDKWSSQFAQDEAYNVNLDLH CHHHHHHHHCCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEC GKGFTLAV CCCCEEEC >Mature Secondary Structure MQSHSVNEHTALNQRLTLLLMAKDQPDFLRRALKYYSQFPCTLIVVDASAQPDAEIAGTA CCCCCCCHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC GLHYLRGDALASASLGVRVAEGLKQVTTPFVVQAPVDSFLLPDALSAALSFLEANPTYGA CHHHHCCCHHHHHHCCHHHHHHHHHHCCCEEEECCCHHHHCHHHHHHHHHHHHCCCCCCC CQGYSLSYQAQVGQVDYFRRDRKTCEDYAADDAGERVLSFMSESLSLLSAVTRTELAQQW CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTSVTDDTEPHWQEIGHMNYLVAAARLRILPIAYALHFTSGKQAELRHGAAIAAAVRHTD HHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCC PKARAARDAFAKKLVALLGEGSGFDSAQGEQKIQAGLAAMGECLKTQGFQGGEKIISAVW HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH NVGLEQSDALFEPRQFVEMPFYNQALFDELARIEFLIHLMPAGRLQLEGLEAALLKQAEL HCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH LREQSNPDAEARISRLWYAYETYAFNLGVVKSLIAELISGKGKDSEKQIEQVSAWSQRLQ HHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH AASAFDNGRLLDGMASGQLLNWLDSRDPAPEALKQISDKLASKPAGSQIGILVLDLEADV HHHHCCCCCEECCHHCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH FKLQATFDSLINSHYKAFRVAVFTTGELPAVTTLHSTLHFVKVTESNYVDKINQFVKQSP HHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHCCC SDWLMLAHAGEEFTRSGLLLASAELIDAAQCRAVAVDEVQRQANGTLAPLFRPGFNLDLL CCEEEEEECCHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH QSLPALMARHWLVRRELLVEAGGYSREFPEALEFDLLLRLIEQGGMSGLAHLSEPLLICE HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEC APELKDNPDEQKALKRHLGKRGYQAEVSSAQPGTYKIDYRHAHRPVVSILLHSQDNLPQL CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHH QRCLQSILQRTRYQRYEVLIGDNASTSAELSTWLDRQEQVSGRVRVFRAEQRMSPAALRN HHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHCCCHHHHHH LISQEAGGEYLILLDAESQIVNVGWIESLLNQAQRPEVGVVGAKLVDGEGAVTQAGLVLG HHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCEEEE LNGGVGSGFVGEPKTATGYMQRLVVEQNYSAVSSACLMIAKELYNAVGGLDEEAFAEALG ECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC DVDLCLKAAQAGYLTVWTPHVQVVHSGVLHAPQQAREALMDKWSSQFAQDEAYNVNLDLH CHHHHHHHHCCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEC GKGFTLAV CCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]