Click here to switch to the map view.

The map label for this gene is ccmF [H]

Identifier: 66046617

GI number: 66046617

Start: 4046621

End: 4048594

Strand: Reverse

Name: ccmF [H]

Synonym: Psyr_3388

Alternate gene names: 66046617

Gene position: 4048594-4046621 (Counterclockwise)

Preceding gene: 66046618

Following gene: 66046616

Centisome position: 66.44

GC content: 63.32

Gene sequence:

>1974_bases
ATGATTCCCGAACTCGGCCATCTGGCCATGATTATGGCACTCGGCTTTGCGCTGGTGCAGGCCATCATTCCGCTGATCGG
CGCGTGGCGCGGTGACCGCTTGTGGATGAGCCTGGCCCGTCCGGCAGCCTGGGGCCAGTTCAGCTTTCTGATCTTCGCCT
TCGGTTGCCTGACCTACGCGTTCATGGTCGACGACTTCTCTGTCGCCTACGTTGCACAGAACTCCAACACCGCGCTGCCC
TGGTACTACAAGTTCAGCGCCGTGTGGGGCGCGCATGAAGGTTCGTTGCTGCTTTGGGCATTGATTCTCGGTGGCTGGAC
CTTCGCCGTGTCGGTGTTTTCCCGGCAACTGCCGCAGGTGATGCTGGCGCGGGTCCTCGCCGTGATGGGCATGATCAGCC
TGGGTTTCCTGTCGTTTCTGATCCTCACCTCAAATCCGTTCGCGCGTCTGTTGCCGCAGATGCCCGCGAATGGACGTGAT
CTGAACCCGTTGTTGCAGGATATTGGCCTTATCGTGCATCCGCCGATGCTGTACATGGGCTATGTCGGCTTCTCCGTGGC
GTTTGCATTCGCCATCGCCGCCTTGCTCGGCGGTCGACTCGACGCTGCCTGGGCGCGCTGGTCCAGGCCGTGGACGCTGG
TGGCCTGGGCCTTTCTCGGCATCGGCATCAGCCTGGGCTCATGGTGGGCGTATTACGAGCTGGGCTGGGGCGGCTGGTGG
TTCTGGGACCCGGTGGAAAACGCCTCGTTCATGCCTTGGCTGGTCGGCACTGCGCTGATTCACTCGCTGGCGGTCACGGA
AAAACGTGGCGTGTTCAAGAGCTGGACGGTATTGCTGGCCATTGCTGCGTTTTCACTGAGCCTGCTGGGCACGTTCCTGG
TCCGTTCCGGGGTGCTGACCTCCGTGCACGCCTTTGCCTCGGACCCGGCGCGCGGCGTGTTCATCCTGATGTTCCTGCTG
GTCGTGGTGGGTGGCTCGCTGACCCTGTTCGCGATTCGCGCACCGGTGGTCAAAAGCCAGGTCGGATTCGGCCTGTGGTC
GCGGGAAACCCTGCTGCTGGGCAATAACCTGTTGCTGGTGGTTGCCGCGTCCATGATTCTGCTGGGCACCCTTTATCCGC
TGGTGATCGATGCCATGAGCGGCGCCAAGATGTCGGTCGGGCCGCCGTACTTCAATACACTGTTCGTGCCATTGATGGGC
TTGCTGCTGGTGGTGATGGCGGTCGGCGTACTGGTGCGCTGGAAGGACACGCCGTTGAAATGGCTGCTCGGCATGCTGGC
CCCGGTACTGGTCGGCAGCGTCGTCCTGGCGGTGCTGGCCGGTCTGCTGCTGGGCGATTTCCAGTGGGCGGTGCTGGCGA
CCCTGATGCTCGCCGCCTGGGTGCTGCTGGCCGGGGTTCGCGACCTGCTCGACAAGACTCGCCACAAGGGGCTGATCAGC
GGCGCACGCAGTCTGACCCGCAGCTACTGGGGCATGCAGCTGGCGCACCTTGGCATTGTCGTGTGCGCGCTGGGTGTGGT
GCTGTCGAGCCAGAACAGCGCCGAGCGCGATTTGCGCATGGCCCCCGGCGAGTCCACCGAACTGGGTGGGTATACCTTTG
CCTTCGAGGGCGCTCGGCATTATGAAGGGCCGAACTTCACCTCGGATCGGGGCACCGTTCGCGTGCTGCGCAATGGCGTT
CAACTGACCGAACTGCACCCGGAGAAGCGCTTCTACACCGTGCAGCAGTCGATGATGACCGAAGCGGGCATTGATGCCGG
TTTCAGCCGTGACCTGTATGTCGCCTTGGGTGAACCGCTGGGCGATGGCGCGTGGGCCGTTCGGGTTCATGTCAAACCGT
TTGTGCGCTGGATCTGGCTTGGCGGCCTGCTGACCGGTCTGGGCGGGGTGCTGGCGGCGCTGGACCGGCGTTATCGCACC
CGGGTGAAGAACAAGGTGCGCGAGGCGTTGGGTATGTCGGGAGCTGCACAATGA

Upstream 100 bases:

>100_bases
TGACGAGAAGTACATGCCCCCCGAGGTCACCAAGGCCCTGCGTGACAGCGGTCGGGCGGCACCGGCTGCGTCTCCCACAC
CCGTCAAACAGGGTTGATCG

Downstream 100 bases:

>100_bases
AACGTTGGGTCATGGTACTGCCACTGGTGCTGTTTCTGGGCGTCGCGGCGTTCTTGTATCGCGGTTTGTATCTGGACCCC
GCCGAGCTGCCCTCGGCACT

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycK [H]

Number of amino acids: Translated: 657; Mature: 657

Protein sequence:

>657_residues
MIPELGHLAMIMALGFALVQAIIPLIGAWRGDRLWMSLARPAAWGQFSFLIFAFGCLTYAFMVDDFSVAYVAQNSNTALP
WYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISLGFLSFLILTSNPFARLLPQMPANGRD
LNPLLQDIGLIVHPPMLYMGYVGFSVAFAFAIAALLGGRLDAAWARWSRPWTLVAWAFLGIGISLGSWWAYYELGWGGWW
FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFASDPARGVFILMFLL
VVVGGSLTLFAIRAPVVKSQVGFGLWSRETLLLGNNLLLVVAASMILLGTLYPLVIDAMSGAKMSVGPPYFNTLFVPLMG
LLLVVMAVGVLVRWKDTPLKWLLGMLAPVLVGSVVLAVLAGLLLGDFQWAVLATLMLAAWVLLAGVRDLLDKTRHKGLIS
GARSLTRSYWGMQLAHLGIVVCALGVVLSSQNSAERDLRMAPGESTELGGYTFAFEGARHYEGPNFTSDRGTVRVLRNGV
QLTELHPEKRFYTVQQSMMTEAGIDAGFSRDLYVALGEPLGDGAWAVRVHVKPFVRWIWLGGLLTGLGGVLAALDRRYRT
RVKNKVREALGMSGAAQ

Sequences:

>Translated_657_residues
MIPELGHLAMIMALGFALVQAIIPLIGAWRGDRLWMSLARPAAWGQFSFLIFAFGCLTYAFMVDDFSVAYVAQNSNTALP
WYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISLGFLSFLILTSNPFARLLPQMPANGRD
LNPLLQDIGLIVHPPMLYMGYVGFSVAFAFAIAALLGGRLDAAWARWSRPWTLVAWAFLGIGISLGSWWAYYELGWGGWW
FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFASDPARGVFILMFLL
VVVGGSLTLFAIRAPVVKSQVGFGLWSRETLLLGNNLLLVVAASMILLGTLYPLVIDAMSGAKMSVGPPYFNTLFVPLMG
LLLVVMAVGVLVRWKDTPLKWLLGMLAPVLVGSVVLAVLAGLLLGDFQWAVLATLMLAAWVLLAGVRDLLDKTRHKGLIS
GARSLTRSYWGMQLAHLGIVVCALGVVLSSQNSAERDLRMAPGESTELGGYTFAFEGARHYEGPNFTSDRGTVRVLRNGV
QLTELHPEKRFYTVQQSMMTEAGIDAGFSRDLYVALGEPLGDGAWAVRVHVKPFVRWIWLGGLLTGLGGVLAALDRRYRT
RVKNKVREALGMSGAAQ
>Mature_657_residues
MIPELGHLAMIMALGFALVQAIIPLIGAWRGDRLWMSLARPAAWGQFSFLIFAFGCLTYAFMVDDFSVAYVAQNSNTALP
WYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISLGFLSFLILTSNPFARLLPQMPANGRD
LNPLLQDIGLIVHPPMLYMGYVGFSVAFAFAIAALLGGRLDAAWARWSRPWTLVAWAFLGIGISLGSWWAYYELGWGGWW
FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFASDPARGVFILMFLL
VVVGGSLTLFAIRAPVVKSQVGFGLWSRETLLLGNNLLLVVAASMILLGTLYPLVIDAMSGAKMSVGPPYFNTLFVPLMG
LLLVVMAVGVLVRWKDTPLKWLLGMLAPVLVGSVVLAVLAGLLLGDFQWAVLATLMLAAWVLLAGVRDLLDKTRHKGLIS
GARSLTRSYWGMQLAHLGIVVCALGVVLSSQNSAERDLRMAPGESTELGGYTFAFEGARHYEGPNFTSDRGTVRVLRNGV
QLTELHPEKRFYTVQQSMMTEAGIDAGFSRDLYVALGEPLGDGAWAVRVHVKPFVRWIWLGGLLTGLGGVLAALDRRYRT
RVKNKVREALGMSGAAQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=650, Percent_Identity=55.8461538461538, Blast_Score=663, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=366, Percent_Identity=49.1803278688525, Blast_Score=295, Evalue=7e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71737; Mature: 71737

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHLAMIMALGFALVQAIIPLIGAWRGDRLWMSLARPAAWGQFSFLIFAFGCLTYA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
FMVDDFSVAYVAQNSNTALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQV
HHHCCCEEEEEEECCCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MLARVLAVMGMISLGFLSFLILTSNPFARLLPQMPANGRDLNPLLQDIGLIVHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHCCHHCCCHHHHHH
YVGFSVAFAFAIAALLGGRLDAAWARWSRPWTLVAWAFLGIGISLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCEE
FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLT
EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVHAFASDPARGVFILMFLLVVVGGSLTLFAIRAPVVKSQVGFGLWSRETLLLGNNLLLV
HHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCEEEECCCHHHH
VAASMILLGTLYPLVIDAMSGAKMSVGPPYFNTLFVPLMGLLLVVMAVGVLVRWKDTPLK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHH
WLLGMLAPVLVGSVVLAVLAGLLLGDFQWAVLATLMLAAWVLLAGVRDLLDKTRHKGLIS
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GARSLTRSYWGMQLAHLGIVVCALGVVLSSQNSAERDLRMAPGESTELGGYTFAFEGARH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCEEEEECCCHH
YEGPNFTSDRGTVRVLRNGVQLTELHPEKRFYTVQQSMMTEAGIDAGFSRDLYVALGEPL
CCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
GDGAWAVRVHVKPFVRWIWLGGLLTGLGGVLAALDRRYRTRVKNKVREALGMSGAAQ
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIPELGHLAMIMALGFALVQAIIPLIGAWRGDRLWMSLARPAAWGQFSFLIFAFGCLTYA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
FMVDDFSVAYVAQNSNTALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQV
HHHCCCEEEEEEECCCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MLARVLAVMGMISLGFLSFLILTSNPFARLLPQMPANGRDLNPLLQDIGLIVHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHCCHHCCCHHHHHH
YVGFSVAFAFAIAALLGGRLDAAWARWSRPWTLVAWAFLGIGISLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCEE
FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLT
EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVHAFASDPARGVFILMFLLVVVGGSLTLFAIRAPVVKSQVGFGLWSRETLLLGNNLLLV
HHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCEEEECCCHHHH
VAASMILLGTLYPLVIDAMSGAKMSVGPPYFNTLFVPLMGLLLVVMAVGVLVRWKDTPLK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHH
WLLGMLAPVLVGSVVLAVLAGLLLGDFQWAVLATLMLAAWVLLAGVRDLLDKTRHKGLIS
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GARSLTRSYWGMQLAHLGIVVCALGVVLSSQNSAERDLRMAPGESTELGGYTFAFEGARH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCEEEEECCCHH
YEGPNFTSDRGTVRVLRNGVQLTELHPEKRFYTVQQSMMTEAGIDAGFSRDLYVALGEPL
CCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
GDGAWAVRVHVKPFVRWIWLGGLLTGLGGVLAALDRRYRTRVKNKVREALGMSGAAQ
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA